PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g033970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Whirly | ||||||||
Protein Properties | Length: 244aa MW: 26623.2 Da PI: 10.4375 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 207.4 | 1.7e-64 | 64 | 202 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 +++k+kaal+v++v+ptf+++dsgnl+++r+G+l ++++++ +erkyd ++kq f+ls+tev++l++++sk+s+effhdp++k+sn+G+vrk+l+ Csa16g033970.1 64 AIFKGKAALSVEPVLPTFTEIDSGNLRIERRGSLRMTFMPSSGERKYDSGQKQLFSLSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKTLS 158 59********************************************************************************************* PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 ++P++dGsG+f++lsv n+++++n++f+vPv+ aefav++ +++ Csa16g033970.1 159 IKPHADGSGYFFSLSVVNNILNTNDRFVVPVTTAEFAVMKAAFS 202 ****************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.0E-71 | 52 | 219 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.69E-65 | 56 | 241 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.2E-56 | 65 | 199 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MMKQARILLS RSLCDRSKSL LEEKVRATTL RGFASWSGSS ASRGGFSGQK DAAKPSGRVF 60 APYAIFKGKA ALSVEPVLPT FTEIDSGNLR IERRGSLRMT FMPSSGERKY DSGQKQLFSL 120 SPTEVGSLIS MGSKDSSEFF HDPSMKSSNA GQVRKTLSIK PHADGSGYFF SLSVVNNILN 180 TNDRFVVPVT TAEFAVMKAA FSFALPHIMG WDRVIDQVGT GTQKTTSQHL TTGPQHIEQE 240 WDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 1e-102 | 50 | 214 | 2 | 166 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 1e-102 | 50 | 214 | 2 | 166 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 1e-102 | 50 | 214 | 2 | 166 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 1e-102 | 50 | 214 | 2 | 166 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g033970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493532 | 0.0 | AB493532.1 Arabidopsis thaliana At1g71260 mRNA for hypothetical protein, partial cds, clone: RAAt1g71260. | |||
GenBank | AY072110 | 0.0 | AY072110.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds. | |||
GenBank | AY122961 | 0.0 | AY122961.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471140.1 | 1e-180 | PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | Q8VYF7 | 1e-128 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | R0GIE3 | 1e-136 | R0GIE3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010471140.1 | 1e-180 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12358 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-119 | WHIRLY 2 |