PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g032920.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 216aa MW: 24215.8 Da PI: 8.4921

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g032920.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	3e-11	63	116	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn+ Er RR r+ ++ +L +llP s+ ++kK s +i A+ YI +Lq Csa16g032920.1 63 KLDHNAKERLRRMRLHASYLTLGTLLPDHSSSSKKKWSAPSIIDNAITYIPKLQ 116 678***********************87889999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-13	53	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.722	61	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-10	61	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.56E-4	62	119	No hit	No description
Pfam	PF00010	8.2E-8	63	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-7	67	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSSQPNHQTS ISSLLHDRLH IPAETNIEKE SAEKDTCQSQ RKRKEPILHE VDGSSSGAAA 60 AKKLDHNAKE RLRRMRLHAS YLTLGTLLPD HSSSSKKKWS APSIIDNAIT YIPKLQNEVG 120 ELTLRKQKLV ELERRGPSIR AILVLELGES GYEAVVQICL KKENEDEFSN LLHVMEVQGL 180 SILSASTSLV CREQRVVCYN FHVKVCLLFV FFISL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g032920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016162	1e-139	AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBank	AC016972	1e-139	AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBank	CP002684	1e-139	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010471132.1	1e-148	PREDICTED: uncharacterized protein LOC104750971 isoform X2
Swissprot	F4I8F9	1e-128	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A1P8AVK0	1e-127	A0A1P8AVK0_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	XP_010471132.1	1e-147	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-123	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]