PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g032090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TALE | ||||||||
Protein Properties | Length: 135aa MW: 15809.5 Da PI: 5.3205 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.6e-10 | 77 | 111 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp++ ++ LA+++gL+++q+ +WF N+R ++ Csa16g032090.1 77 RWPYPTEGDKIALAEETGLDQKQINNWFINQRKRH 111 569*****************************985 PP | |||||||
2 | ELK | 31.9 | 2.9e-11 | 31 | 52 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK+ LlrK++++++sLk EFs Csa16g032090.1 31 DLKDLLLRKFGSHISSLKLEFS 52 69*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.568 | 31 | 51 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.2E-7 | 31 | 52 | IPR005539 | ELK domain |
SMART | SM01188 | 1.0E-4 | 31 | 52 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.698 | 51 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-20 | 52 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.6E-13 | 53 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-28 | 56 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.66E-11 | 60 | 115 | No hit | No description |
Pfam | PF05920 | 4.8E-18 | 71 | 110 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
DDGAVSSDEE LREADDDVAA HESQQRNNDR DLKDLLLRKF GSHISSLKLE FSKKKKKGKL 60 PREARQALLD WWNVHYRWPY PTEGDKIALA EETGLDQKQI NNWFINQRKR HWKPSENMPF 120 AMMDDSSDTF FTEE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g032090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X81353 | 1e-150 | X81353.1 A.thaliana mRNA for ATK1 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471046.1 | 8e-95 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | P46640 | 2e-78 | KNAT2_ARATH; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A0D3APM9 | 2e-78 | A0A0D3APM9_BRAOL; Uncharacterized protein | ||||
STRING | XP_010471046.1 | 3e-94 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 8e-62 | KNOTTED-like from Arabidopsis thaliana 2 |