PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g031130.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 394aa MW: 45034 Da PI: 7.168

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g031130.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.1	1.2e-51	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l+pGfrFhPtdeelv++yLk+kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ Csa16g031130.1 16 LMPGFRFHPTDEELVSFYLKRKVEDRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSS 109 689*************************.89***********7777889***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +gl+k+Lv+y+g+a kg ktdW+mhe+rl Csa16g031130.1 110 dGNKCIGLRKSLVYYSGKAAKGIKTDWMMHEFRL 143 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-58	10	171	IPR003441	NAC domain
PROSITE profile	PS51005	56.866	16	171	IPR003441	NAC domain
Pfam	PF02365	3.3E-25	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MGEINEEAAR KMEDVLMPGF RFHPTDEELV SFYLKRKVED RPLSIKLITQ LDIYKYDPWD 60 LPKFAMTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GNKCIGLRKS 120 LVYYSGKAAK GIKTDWMMHE FRLPSTSSHT LSDTHHVSSN DSWAICRILK KINTTAFRAI 180 SHSFVSSLPQ DARTDIKPYE KPSNTSQISS DKILPNSCCF KFYNEDMNVA QPSSCFDHKE 240 ATKTSTCTAT SHFSNLGFSS LDSPGPRLDQ QYLRSLLLVP QETQPPQLPN FINNYMISSA 300 DSSFQDEYTN LIIGSNIDLT SVILAQEQCP ALVSLPQEHN HETRIEESIL SNTNHALHHL 360 PTCWRSEASL HVARELLFII VCFFFYYLIY VVP*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MGEINEEAAR KMEDVLMPGF RFHPTDEELV SFYLKRKVED RPLSIKLITQ LDIYKYDPWD  60
LPKFAMTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GNKCIGLRKS  120
LVYYSGKAAK GIKTDWMMHE FRLPSTSSHT LSDTHHVSSN DSWAICRILK KINTTAFRAI  180
SHSFVSSLPQ DARTDIKPYE KPSNTSQISS DKILPNSCCF KFYNEDMNVA QPSSCFDHKE  240
ATKTSTCTAT SHFSNLGFSS LDSPGPRLDQ QYLRSLLLVP QETQPPQLPN FINNYMISSA  300
DSSFQDEYTN LIIGSNIDLT SVILAQEQCP ALVSLPQEHN HETRIEESIL SNTNHALHHL  360
PTCWRSEASL HVARELLFII VCFFFYYLIY VVP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-54	16	171	20	168	NAC domain-containing protein 19
3swm_B	2e-54	16	171	20	168	NAC domain-containing protein 19
3swm_C	2e-54	16	171	20	168	NAC domain-containing protein 19
3swm_D	2e-54	16	171	20	168	NAC domain-containing protein 19
3swp_A	2e-54	16	171	20	168	NAC domain-containing protein 19
3swp_B	2e-54	16	171	20	168	NAC domain-containing protein 19
3swp_C	2e-54	16	171	20	168	NAC domain-containing protein 19
3swp_D	2e-54	16	171	20	168	NAC domain-containing protein 19
3ulx_A	2e-54	1	173	1	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g031130.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	3e-96	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010474233.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-142	FEZ_ARATH; Protein FEZ
TrEMBL	R0HW28	0.0	R0HW28_9BRAS; Uncharacterized protein
STRING	XP_010474233.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-143	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]