PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g031000.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 432aa MW: 47841.4 Da PI: 9.3233

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g031000.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2.1e-37	191	250	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s+ntkfCyynny+++qPryfC++C+ryWt+GG++r vPvG+grrknk + Csa16g031000.1 191 PDKLLPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRSVPVGSGRRKNKGW 250 78999****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	188	248	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-31	193	248	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.22	195	249	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	197	233	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MLTCNFLFLS IYLLSSSFMH YLSSLIPNPK PLVFLSMLRS LKKEKNDLNL HIPRSFHHNI 60 VMSKTRDTEI KLFGRTITSF LAVNHCDPSS VSPFHDVSSD QSKDGSSSSS SSSCSPTIGP 120 NKVPADKNEK ENNRFKDPYI LSDLNKPLKA VSEISSSPIS SKTNCDQQSE ITTTTTTSTT 180 SGEKSTALKK PDKLLPCPRC ESANTKFCYY NNYNVNQPRY FCRNCQRYWT AGGSMRSVPV 240 GSGRRKNKGW PSSNHYLQVT SEDCDNNHSG TILSFGSSES SVTETGKHQS GDTAKKSADH 300 SVSQEHQNYQ GFLPPQVMSP NNTSPWPYQW SPTGPNANFY PIPFYWGCTV PICPTSETPP 360 CLGKRSRDHQ TEGGINNTTT TSTTRARLVS ESLRVNGQAT KSAVWSKLPT KPEKKTQGFS 420 LFNGFDTKGN SN

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MLTCNFLFLS IYLLSSSFMH YLSSLIPNPK PLVFLSMLRS LKKEKNDLNL HIPRSFHHNI  60
VMSKTRDTEI KLFGRTITSF LAVNHCDPSS VSPFHDVSSD QSKDGSSSSS SSSCSPTIGP  120
NKVPADKNEK ENNRFKDPYI LSDLNKPLKA VSEISSSPIS SKTNCDQQSE ITTTTTTSTT  180
SGEKSTALKK PDKLLPCPRC ESANTKFCYY NNYNVNQPRY FCRNCQRYWT AGGSMRSVPV  240
GSGRRKNKGW PSSNHYLQVT SEDCDNNHSG TILSFGSSES SVTETGKHQS GDTAKKSADH  300
SVSQEHQNYQ GFLPPQVMSP NNTSPWPYQW SPTGPNANFY PIPFYWGCTV PICPTSETPP  360
CLGKRSRDHQ TEGGINNTTT TSTTRARLVS ESLRVNGQAT KSAVWSKLPT KPEKKTQGFS  420
LFNGFDTKGN SN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g031000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176346	0.0	AK176346.1 Arabidopsis thaliana mRNA for putative H-protein promoter binding factor-2b, complete cds, clone: RAFL24-04-C08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470950.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	0.0	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	R0IAS5	0.0	R0IAS5_9BRAS; Uncharacterized protein
STRING	XP_010470950.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	0.0	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]