PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g030340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 315aa    MW: 34734.2 Da    PI: 5.1452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g030340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.7e-155099255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L ++++Y+++Lq
  Csa16g030340.1 50 RSKHSVTEQRRRSKINERFQLLRELIPNS----EQKRDTASFLLEVIDYVQYLQ 99
                    899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-1846119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-2147121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2094898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-1450103No hitNo description
PfamPF000101.2E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1154104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRTGKGNQEE EDYGEEDFSS KREGPSSKTT VHSNNNNRDA KENDKASAIR SKHSVTEQRR  60
RSKINERFQL LRELIPNSEQ KRDTASFLLE VIDYVQYLQE RVQKYEGSYP GWSQEPTKLT  120
PWRNNHWRVQ SLANHPVAIN NGSGPGISFP GKFEENAVAS TPAIVAEPQI PIESDNGRAI  180
TGKPIESQPE LDDKGLPPVQ PILPLVQGEQ ANECPATSDV LGQSNDLVIE GGTISISSAY  240
SHELLSSLTQ ALQTAGIDLS HAKLSVQIDL GKRANQGLTH DDPSSKNPLS SDTQARDPSF  300
EEESEQSHKR MKTL*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g030340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0023520.0BT002352.1 Arabidopsis thaliana clone C104950 putative DNA-binding protein (At1g69010) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470876.10.0PREDICTED: transcription factor BIM2 isoform X1
SwissprotQ9CAA40.0BIM2_ARATH; Transcription factor BIM2
TrEMBLR0I0050.0R0I005_9BRAS; Uncharacterized protein
STRINGXP_010470876.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.10.0BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]