PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g028750.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 222aa MW: 24329.2 Da PI: 9.7695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g028750.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00014	57	95	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa16g028750.1 57 REKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 95 89*************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.706	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.56E-6	57	99	No hit	No description
SuperFamily	SSF47459	6.54E-13	57	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-13	57	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MVIKRGIKSK VQIHLETRQT VGNNRANKVL ILQKMDIFMC GHEEARPQIA IVLQKGREKI 60 SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP QMDFNLEGLL 120 AKDALQLRAG SSSTTPFPQN MSMAYPPLPH GFMQQTLSSI GRTISSPLSP INGGFKRQET 180 TGWEGDLQNV IHINYGAGDV TPDPQAAATA SLPAANMKAE P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g028750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
GenBank	AY128299	0.0	AY128299.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.
GenBank	BT002259	0.0	BT002259.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470831.1	1e-165	PREDICTED: transcription factor bHLH49-like
Swissprot	Q9CAA9	1e-106	BH049_ARATH; Transcription factor bHLH49
TrEMBL	V4KM38	1e-107	V4KM38_EUTSA; Uncharacterized protein
STRING	XP_010470831.1	1e-164	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-107	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]