PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g028740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26564.1 Da PI: 7.0855 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.9 | 2.3e-07 | 20 | 58 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50 f +R g KKA ELSvLC+ + + + + +++l+ ++ Csa16g028740.1 20 FKQRFPGFKKKAIELSVLCGNSIGFVCYTPdDNNLHIWP 58 566777888**************9888876257788886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.62E-10 | 9 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 8.928 | 10 | 48 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-6 | 16 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAPRVRKVCV DDLKMKKKLF KQRFPGFKKK AIELSVLCGN SIGFVCYTPD DNNLHIWPDL 60 QEKPQALTQL LAKFNALSDH KRKNNACDLY DFPDIKGLSG EDLRRHVDNL DSHLLRIKQQ 120 KISLLRRGNS KNPKPKETEE GDRVSDRLGF GHDVFGGYHE TAMGSCAVSR DVGVSDSSLL 180 DPFKSDYFPT DNFGVCANNG AWDLSWMDLD FSSTLFPAGY DPLLGATDEY QTLVTI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g028740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470829.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL49 | ||||
TrEMBL | D7KXG1 | 8e-84 | D7KXG1_ARALL; Uncharacterized protein | ||||
STRING | XP_010470829.1 | 1e-175 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11232 | 9 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60040.1 | 2e-48 | AGAMOUS-like 49 |