PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g028540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CO-like | ||||||||
Protein Properties | Length: 570aa MW: 64610.1 Da PI: 5.1863 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.6e-07 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC+ C + H+ H++v Csa16g028540.1 14 ARACDSCVKRRARWYCAADDAFLCHCCDGSVHSAnplarrHERV 57 578*****************************657888888876 PP | |||||||
2 | CCT | 67.8 | 2.8e-23 | 520 | 563 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Csa16g028540.1 520 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 563 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.438 | 12 | 59 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.7E-8 | 12 | 59 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-5 | 14 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.20E-8 | 15 | 59 | No hit | No description |
PROSITE profile | PS50119 | 9.172 | 167 | 215 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-5 | 167 | 215 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.11E-6 | 176 | 215 | No hit | No description |
Pfam | PF06203 | 8.2E-18 | 520 | 562 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 520 | 562 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHCC DGSVHSANPL ARRHERVRLK 60 TASTGKHRHA SSSSPPHETT WHQGFTRKAR TPRGGKKRHT MVFHDLVPEM STEDQTESYE 120 VEGQLIFEVP VMNPMVEEQC FNESVETKIE VPMMPVCFKS SDEEDEDNAE SCLXCCVKRR 180 ARWYCAADDA FLCHCCDGSV HSANPLARRH ERVRLKTAST GKHRHASSSS PPHETTWHQG 240 FTRKARTPRG GKKRHTMVFH DLVPEMSTED QTESYEVEGQ LIFEVPVMNP MVEEQCFNES 300 VETKIEVPMM PVCFKSSDEE DEDNAESCLN GLFPTDMELA QFTADVETLL GGGIERDFYP 360 TEDLGLGEML KIEKEEVEEE EGVATRDVCD LNEVDETSPF EISFDYEYAS KSTYEEEEEE 420 DEKEDVMKNV IDMGVNEMSG KIKEENKEKA LMLRLDYESV LSTWGGQGIP WTAQEPSEID 480 LDMVCCPTDS MGESGADQAH HYNHFRGLGL HMGEAGDGGR EARVSRYREK RRTRLFSKKI 540 RYEVRKLNAE KRPRMKGRFV KRSSIAAAH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 530 | 546 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g028540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470801.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X1 | ||||
Refseq | XP_010470802.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X2 | ||||
Swissprot | Q8LG76 | 0.0 | COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | R0GHM3 | 0.0 | R0GHM3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470801.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2467 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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