PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 570aa    MW: 64610.1 Da    PI: 5.1863
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.6e-071457340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + + +++++C  ++ +lC+ C  + H+       H++v
  Csa16g028540.1 14 ARACDSCVKRRARWYCAADDAFLCHCCDGSVHSAnplarrHERV 57
                    578*****************************657888888876 PP

2CCT67.82.8e-23520563144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Csa16g028540.1 520 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 563
                     9*****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4381259IPR000315B-box-type zinc finger
SMARTSM003363.7E-81259IPR000315B-box-type zinc finger
PfamPF006433.2E-51457IPR000315B-box-type zinc finger
CDDcd000214.20E-81559No hitNo description
PROSITE profilePS501199.172167215IPR000315B-box-type zinc finger
SMARTSM003361.2E-5167215IPR000315B-box-type zinc finger
CDDcd000219.11E-6176215No hitNo description
PfamPF062038.2E-18520562IPR010402CCT domain
PROSITE profilePS5101716.083520562IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHCC DGSVHSANPL ARRHERVRLK  60
TASTGKHRHA SSSSPPHETT WHQGFTRKAR TPRGGKKRHT MVFHDLVPEM STEDQTESYE  120
VEGQLIFEVP VMNPMVEEQC FNESVETKIE VPMMPVCFKS SDEEDEDNAE SCLXCCVKRR  180
ARWYCAADDA FLCHCCDGSV HSANPLARRH ERVRLKTAST GKHRHASSSS PPHETTWHQG  240
FTRKARTPRG GKKRHTMVFH DLVPEMSTED QTESYEVEGQ LIFEVPVMNP MVEEQCFNES  300
VETKIEVPMM PVCFKSSDEE DEDNAESCLN GLFPTDMELA QFTADVETLL GGGIERDFYP  360
TEDLGLGEML KIEKEEVEEE EGVATRDVCD LNEVDETSPF EISFDYEYAS KSTYEEEEEE  420
DEKEDVMKNV IDMGVNEMSG KIKEENKEKA LMLRLDYESV LSTWGGQGIP WTAQEPSEID  480
LDMVCCPTDS MGESGADQAH HYNHFRGLGL HMGEAGDGGR EARVSRYREK RRTRLFSKKI  540
RYEVRKLNAE KRPRMKGRFV KRSSIAAAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1530546RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470801.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X1
RefseqXP_010470802.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X2
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLR0GHM30.0R0GHM3_9BRAS; Uncharacterized protein
STRINGXP_010470801.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]