PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g027910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 27974 Da PI: 10.5704 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.1 | 9.8e-23 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++ +++r +++ kR+++++KKA ELSvLC++ev+vi ++ +g l++ys Csa16g027910.1 10 SSSHQIQRATSLMKRQATVFKKARELSVLCAIEVCVICYGADGALKTYS 58 78999*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.853 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-8 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-16 | 13 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-13 | 14 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.72E-17 | 16 | 85 | No hit | No description |
PRINTS | PR00404 | 1.9E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKTTKPASSS SSHQIQRATS LMKRQATVFK KARELSVLCA IEVCVICYGA DGALKTYSEE 60 RDKVEAIARR YVALSETKRR KRSVDLDRSL ANSNKKKKLV RPRRVSKFPV WDPRFDNYSG 120 EQLTGLVQSL ERNLTRLQDR FRDLVEVQKQ RNMNQGPSSS TRNTINQYLL PQQQQQPNQF 180 SMFLLNHENG NVAQIPLGLM NQGRQSVPMI PPELLMNPDV GNYNSGSLGA FGPPLYDLSQ 240 PLFSLSV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 97 | RKRSVDLDRSLANSNKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g027910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474196.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL103 | ||||
Swissprot | Q9LSB2 | 5e-72 | AG103_ARATH; Agamous-like MADS-box protein AGL103 | ||||
TrEMBL | R0I855 | 2e-73 | R0I855_9BRAS; Uncharacterized protein | ||||
STRING | XP_010474196.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 1e-70 | AGAMOUS-like 103 |
Publications ? help Back to Top | |||
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