PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g026910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28491.4 Da    PI: 6.9217
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g026910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53.1e-221058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +++ + +r +++ kR+++++KKA ELSvLC++ev+vi ++ +g l++y+
  Csa16g026910.1 10 SSSHQVQRATSLLKRQATVFKKARELSVLCAIEVCVICYGADGALKTYP 58
                    788999******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.11161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-6160IPR002100Transcription factor, MADS-box
PfamPF003191.2E-131357IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-131360IPR002100Transcription factor, MADS-box
CDDcd001206.06E-151758No hitNo description
PRINTSPR004045.9E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKTTKPASSS SSHQVQRATS LLKRQATVFK KARELSVLCA IEVCVICYGA DGALKTYPEE  60
MELLHFHLTT LPLPASSIVD DSYFWRIEDT DLEASVDLDG SLANSNKKKL VRPRCVSKFP  120
VWDPRFDNYS GEQLTGLVQS LERNLTRLQD RFRDLVEVQK QRNMNLGPSS STRNTINQYL  180
LPQQQQQPNQ FSMFLLNHEN GNVSQIPLGL MNQGQSVPMI PPELLMNPDV GNYNSGSLGA  240
FGPPLYDLSQ PLFS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g026910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474196.11e-136PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB28e-58AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLR0I8558e-58R0I855_9BRAS; Uncharacterized protein
STRINGXP_010474196.11e-135(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.17e-56AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]