PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g023660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 338aa    MW: 38613.5 Da    PI: 5.0682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g023660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-1461108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
   Csa16g023660.1  61 KGPWTAEEDRKLMNFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 108
                      79******************************99************97 PP

2Myb_DNA-binding49.88.1e-16120158747
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       E++  +d++ qlG++ W++Ia++++ gRt++++k++w+++
   Csa16g023660.1 120 YEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 158
                      599*************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2052109IPR009057Homeodomain-like
PROSITE profilePS5129413.85356108IPR017930Myb domain
SuperFamilySSF466892.25E-2658155IPR009057Homeodomain-like
SMARTSM007172.3E-1160110IPR001005SANT/Myb domain
PfamPF002492.0E-1361108IPR001005SANT/Myb domain
CDDcd001672.08E-763108No hitNo description
PROSITE profilePS5129425.041109163IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-24110163IPR009057Homeodomain-like
SMARTSM007171.6E-13113161IPR001005SANT/Myb domain
PfamPF002492.0E-13120158IPR001005SANT/Myb domain
CDDcd001676.78E-10121159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
QVSLQLAITL TLSGQRQEIE KYRKINSVLF INLKSRRNSI QSEGEREMGR QPCCDKVGLK  60
KGPWTAEEDR KLMNFILTNG QCCWRAVPKL AGLLRCGKSC RLRWTNYLRP DLKRGLLSDY  120
EEKMVIDLHS QLGNRWSKIA SHLPGRTDNE IKNHWNTHIK KKLRKMGIDP LTHKPLSIVE  180
QEDEEPVKKL QKVQMPLQEP AEKNLEEPTS YCLTKESNNT KNTSRLEESL DDDQFNAMNL  240
EYSVEDVPLI DPESLELICS NSTMSSSTST PSNSSNDSSF LKDLQFPDFE WSDYGNSNNN  300
DNNDGVDNII ENSMMSLWDV DDFSSWDLLL SSTFGLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26591635108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g023660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0628691e-174AF062869.1 Arabidopsis thaliana putative transcription factor (MYB20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470497.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-149MYB20_ARATH; Transcription factor MYB20
TrEMBLD7KTM01e-171D7KTM0_ARALL; Uncharacterized protein
STRINGXP_010470497.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-135myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]