PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g023380.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 282aa MW: 31992.3 Da PI: 7.3007

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g023380.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.8	1.8e-15	10	56	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +ien+s r+ f k ++g KK +ELSvLC++e++ +i+s+++ + e Csa16g023380.1 10 FIENDSMRKARFNKGKKGFVKKIHELSVLCGIEACAVIYSPSNSVLE 56 8****************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.92E-22	1	85	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-20	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.848	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.33E-29	2	85	No hit	No description
PRINTS	PR00404	1.9E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-14	10	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MTRKKLNLSF IENDSMRKAR FNKGKKGFVK KIHELSVLCG IEACAVIYSP SNSVLEVWPS 60 NLGVKNVVEK FEMLTNMEQE KKMVNHEGFL KQNISKGMGN NKRKMKDNTE RMMKEAMFEL 120 LGGKADRFKV TNKHREDLCE YIDQYLKELY HHKNKTLRQS HVEYGESLEA ATNVMAPTSS 180 VEVNSQFSPT LIVSNSPQVT NDLLPLRPII SSSQIPEEVN TFTVINPVGV YDHNANVNHL 240 GHNQYQQQDG YPTIVPQYGI DNPSQNQGQQ AEWLVSDDDL S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g023380.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010486064.1	1e-174	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	S6BIQ2	1e-116	S6BIQ2_TURGL; Agamous-like MADS-box protein AGL45 (Fragment)
STRING	XP_010486064.1	1e-174	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.1	1e-103	M-type_MADS family protein