PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g023250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 624aa    MW: 71347.4 Da    PI: 6.428
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g023250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-5561341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v 
  Csa16g023250.1   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99 
                     79****************************.99***************6434555777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     s ++++vg+kktLv+y+grap+g++tdWvmheyrle
  Csa16g023250.1 100 S-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                     9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-644156IPR003441NAC domain
PROSITE profilePS5100560.8996156IPR003441NAC domain
PfamPF023653.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECES KSGIQDAYAL CRVFKKSGLA NKIEEKQHHG MKNKATTNSE  180
QSTSSTCLYT DGMYENLENS EYPISPDTGG LTQLGNTSSL EMETIENKWN QFMSHDTSFN  240
FPAQSQYGTI SYPPTKVEIE LECARLQNRM LPTVPPLYVE DLTHGEYLGN NVANDTDEML  300
SKIIALAQSS QEPRNSLDSA SGTFNGDFNY SGEKLACIQA NMKAVDMQEH YGRYKEERLV  360
ENLRWVGVSS KELEKSFIEE HSTVVPIEDI WSYHRDTQEH ENQDLMDVNN NNGDVDDAFT  420
LEFSENEHNE ILLDKSDHDT KISPRFDVVK KVEVSHGLFV TTRQVTNTFF QQIVPSQTVI  480
VYINPTGVHE FCHNVTSKEE ARVREKINPQ TNGVVSTFLG PWRKLAYVFG FIPMLLLMRC  540
VHQRGNNNKN QSSERYSAQP KVGDCNNPGT ILMMENAVER RKIWKKEKGR VDERGLWVQD  600
IFLLKKLGIS LAIILAVSTI SLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-56116215174NAC domain-containing protein 19
3swm_B1e-56116215174NAC domain-containing protein 19
3swm_C1e-56116215174NAC domain-containing protein 19
3swm_D1e-56116215174NAC domain-containing protein 19
3swp_A1e-56116215174NAC domain-containing protein 19
3swp_B1e-56116215174NAC domain-containing protein 19
3swp_C1e-56116215174NAC domain-containing protein 19
3swp_D1e-56116215174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g023250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-166CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P191e-166AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470462.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
TrEMBLR0HWP30.0R0HWP3_9BRAS; Uncharacterized protein
STRINGXP_010470462.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28