PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g017520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 521aa    MW: 56646.2 Da    PI: 4.6764
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g017520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.31.1e-092472752250
                     HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  22 KKAeELSvLCdaevaviifsstgklyeys 50 
                     KKA ELSvLC+  v  i +++++ l+ ++
  Csa16g017520.1 247 KKATELSVLCGNSVGFICYGPDNDLHVWP 275
                     9**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002663.88E-14231305No hitNo description
SuperFamilySSF554552.49E-10233307IPR002100Transcription factor, MADS-box
PfamPF003195.6E-7244274IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAPCDKNPSK SGGGGDDDLK TKKYLFKQKF PAFKKKAIEL CPDNDLHVWP DPQDKPQALP  60
EIVGKFNSLS DHMRKSHASD LFDLPHLKGL SNEELLRHLD KLNSHSLGIK QKKMRVSDNA  120
AAIISNRKEA AVLSDDQLGF RDHETVSDLG SIAAASKVCS VSDSSLHNPP LTLGLSCGDY  180
SPVDPLPVTD NMNPSCEKEV IPSHQQNQSQ LRSSSPSKSC GDDDDDDDDL KRAKRNFFKQ  240
IFPTFKKKAT ELSVLCGNSV GFICYGPDND LHVWPEPQED PRAIPEIVAK FNGLSDLKRK  300
NHASDLYGLP MLKGLLGDEL RNHLINLDSH LLGIKQKKMS ILRRSSPTHK PRDAGVSDSS  360
VLNPLTLGLS CGDYYPVDSM PATDNMNPCC VIPSDLQNQS ELGSSSLSLE MATCDNNPNK  420
FGGGCEKEVI PSGQQNQSEL RLSSLSLEMA PYDDDDDDDD DDGVSDSSML DSSGSSGGDS  480
LPIDQIPTTT YSLEVCANEG ASDDDLCRID LHFASTLFPG *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g017520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083117.10.0PREDICTED: uncharacterized protein LOC104700767 isoform X1
RefseqXP_019083118.10.0PREDICTED: uncharacterized protein LOC104700767 isoform X1
SwissprotQ9ZUI94e-50AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLD7KXQ51e-61D7KXQ5_ARALL; Uncharacterized protein
STRINGXP_010414647.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.12e-48AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]