PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g017430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 301aa MW: 34354.8 Da PI: 7.0705 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.1 | 8.4e-17 | 14 | 58 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ien+s r+ tf kR++g KK +ELSvLC++e++ +i+ + + + Csa16g017430.1 14 YIENDSMRKATFNKRKKGFVKKIHELSVLCGIEACAVIYNPFNSV 58 59************************************9887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-22 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.199 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-24 | 6 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.10E-34 | 6 | 89 | No hit | No description |
PRINTS | PR00404 | 9.9E-11 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-16 | 15 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-11 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-11 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MVNITTRKKL NLSYIENDSM RKATFNKRKK GFVKKIHELS VLCGIEACAV IYNPFNSVPE 60 VWPSNLGVKN VVEKFEMLTV MEQEKKMVNH EGFLKQNISK AMANNKRKMN DNEERMMKEA 120 MFELLGGKAD RLKLTNRHRE DLCKYIDQYL KELYHHKNKI LRQSHVEYGE SSEAATNVMA 180 PTSSVEVNSQ FFPTLNVSNS PQVTNDLWPL RPIFSSSHMP EEVNTFPGNN LSAAAAQKDY 240 YPVINPVGVY DHNANVNHLG HNQYQQQDGY PAIVPQYGID NPSQNQGQQE EWLVSDDDIS 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g017430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486064.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 6e-47 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6BIQ2 | 1e-135 | S6BIQ2_TURGL; Agamous-like MADS-box protein AGL45 (Fragment) | ||||
STRING | XP_010486064.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.1 | 1e-106 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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