PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g016850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 287aa    MW: 32420.4 Da    PI: 8.6903
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g016850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.66.1e-17207241135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C tt Tp+WR+gp g ktLCnaCG+++r+ +l
  Csa16g016850.1 207 CTHCETTRTPQWREGPCGRKTLCNACGVRFRSGRL 241
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.2E-16201251IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14205264No hitNo description
PROSITE profilePS5011411.701205237IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-13205238IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.47E-14206263No hitNo description
PfamPF003208.2E-15207241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207232IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNNGSWLPEE DFKGLEDNFF DNFVEHMDDI PLEDIETADD DEEDWVTGFK NLGPPPLDVL  60
TSLSSEFNCK VQRVRVHKPA TIVKQSSSSD VSSTVDNFPP DVKVSKLFQS TSPVSVLENS  120
NGSALSQNQN RIQRLAFLVK GIRSKRKRPT TLRFFQSLGA EMSQMFVPEE SESENSAKKK  180
RKKYRSPPQS VCHSPELFNP DGTVRKCTHC ETTRTPQWRE GPCGRKTLCN ACGVRFRSGR  240
LVPEYRPASS PTFVPTVHSN SHRKIIEMRR KDEGQPDTRK IRTVTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g016850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470100.10.0PREDICTED: putative GATA transcription factor 13
SwissprotQ9SKN61e-116GAT13_ARATH; Putative GATA transcription factor 13
TrEMBLR0FY111e-152R0FY11_9BRAS; Uncharacterized protein
TrEMBLR0FY421e-153R0FY42_9BRAS; Uncharacterized protein
STRINGXP_010470100.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.13e-99GATA transcription factor 13