PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g016840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 234aa MW: 26047.1 Da PI: 5.4264 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.8 | 1.7e-19 | 162 | 195 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tt Tp+WR+gp+g+ktLCnaCG+++r+ + Csa16g016840.1 162 CTHCETTRTPQWREGPRGPKTLCNACGVRFRSGR 195 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.04E-14 | 155 | 218 | No hit | No description |
SMART | SM00401 | 1.2E-15 | 156 | 206 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.281 | 156 | 192 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.3E-15 | 161 | 193 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.07E-17 | 161 | 210 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 162 | 187 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.7E-17 | 162 | 195 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSNGSWLPEE DLKVLEDNFF DTLVDDMDDF PLENIETADD DEEDRVAGFQ NLGSPLPLDV 60 LTSLYTQFTC KKQASSSDVS PTVDSSPPDV KVLKLIKSSS PVSVIENTNG SALSHNQNRI 120 QRLGAEMSQQ LVPDESESET YLSSENSAKK KRKKQKTPAP KCTHCETTRT PQWREGPRGP 180 KTLCNACGVR FRSGRLFPEY RPASSPTFIP TVHSNMHRKI VEMRRKGEGQ LDT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 153 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g016840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470099.1 | 1e-174 | PREDICTED: putative GATA transcription factor 13 | ||||
Swissprot | Q9SKN6 | 5e-80 | GAT13_ARATH; Putative GATA transcription factor 13 | ||||
TrEMBL | R0FY42 | 1e-105 | R0FY42_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470099.1 | 1e-173 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1681 | 25 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28340.1 | 3e-71 | GATA transcription factor 13 |