PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g016830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 287aa MW: 32141.8 Da PI: 7.8576 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.8 | 2.3e-16 | 214 | 248 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C tt Tp+WR+gp g tLCnaCG+++r+ +l Csa16g016830.1 214 CTHCETTRTPQWREGPCGRNTLCNACGVRFRSGRL 248 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-15 | 208 | 258 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.939 | 212 | 244 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.0E-13 | 212 | 245 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.23E-14 | 212 | 271 | No hit | No description |
CDD | cd00202 | 1.63E-14 | 213 | 262 | No hit | No description |
Pfam | PF00320 | 2.7E-14 | 214 | 248 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 214 | 239 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MSNGSWLPEE DFKGLADNFF DNLVEHMDEF PLEDIETADD DEEEDWVTGF KNLGPPPLDV 60 LTSLSSEFNC KVQRVRVHKP ATIVKQSSSS DVSSTVDNSP PDVKVSKLFQ SSSPVSVVDN 120 NTNGSVLSQN QNRIQRLAFL VKGIRSKRKR PTTLRFFQSL GAEMSQHFVS DESESETYLS 180 SESSAKKRKK NKSRPAPSVS SPELFNSDGT VRKCTHCETT RTPQWREGPC GRNTLCNACG 240 VRFRSGRLVP EYRPASSPTF IPTVHSNSHR KIIEMKTKTE RSEHRD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 189 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g016830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470098.1 | 0.0 | PREDICTED: putative GATA transcription factor 13 | ||||
Swissprot | Q9SKN6 | 1e-107 | GAT13_ARATH; Putative GATA transcription factor 13 | ||||
TrEMBL | R0FY42 | 1e-156 | R0FY42_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470098.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1681 | 25 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28340.1 | 2e-82 | GATA transcription factor 13 |