PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g016640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 225aa    MW: 24486 Da    PI: 8.7904
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g016640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.61.3e-381776463
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                    +a++cprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+nk+sss
  Csa16g016640.1 17 EAQSCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 76
                    5789****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-231768IPR003851Zinc finger, Dof-type
PfamPF027011.0E-321873IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0121973IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102157IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEEEMKKKGS RGELGGEAQS CPRCESPNTK FCYYNNYSLS QPRYFCKSCR RYWTKGGTLR  60
NVPVGGGCRR NKRSSSFSKN NNNKSINFHN DPLHNNPLIT GMPQSSFGYD SIDLNLAFAS  120
LQKHHSSSQA TTPSFGFGGD LSIYGNSAND AGIFGGQNGN ERKQENVGNN NNISESPSKV  180
LLGFPWQMTG DSAGVVPEID PGRESWNGLA SSWNNNGLLN APLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g016640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065871e-178AC006587.5 Arabidopsis thaliana chromosome 2 clone T17D12 map mi54, complete sequence.
GenBankAY0704211e-178AY070421.1 Arabidopsis thaliana putative DOF zinc finger protein (At2g28510) mRNA, complete cds.
GenBankCP0026851e-178CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470072.11e-139PREDICTED: dof zinc finger protein DOF2.1-like isoform X1
RefseqXP_010470073.11e-139PREDICTED: dof zinc finger protein DOF2.1-like isoform X2
SwissprotQ8LE431e-116DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLD7LJK01e-125D7LJK0_ARALL; Uncharacterized protein
STRINGXP_010470072.11e-139(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-110Dof family protein