PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g016620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 164aa MW: 18620.6 Da PI: 4.1146 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.2 | 6.1e-18 | 12 | 96 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +s+ l +p ++ e+ + +kt +l+ + g+ W+v + + +++++++++GW +Fv +n+Lk+g+f++F +dg +++ v++f Csa16g016620.1 12 LSQYSSDSLLIPVSYYEHLP--RPLPKTGILMGTGGKIWKVAM--KSRQEQVYFERGWANFVADNDLKDGEFLIFVFDG--YRRYEVSIFG 96 45667788********5554..4588999**************..999999*************************877..4445787775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.592 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-22 | 5 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-21 | 5 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.71E-18 | 5 | 95 | No hit | No description |
SMART | SM01019 | 8.5E-17 | 7 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-15 | 9 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
GDVLPRFFSV YLSQYSSDSL LIPVSYYEHL PRPLPKTGIL MGTGGKIWKV AMKSRQEQVY 60 FERGWANFVA DNDLKDGEFL IFVFDGYRRY EVSIFGHGGC KEIRAAVEVE EIFDGTESEN 120 NESSLESVRQ DEEEETIDAD AKSDTNYSPD TIENQQMDFG IIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-22 | 6 | 100 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g016620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019093818.1 | 1e-118 | PREDICTED: B3 domain-containing protein At3g06220-like | ||||
Swissprot | Q1PES7 | 1e-62 | Y3622_ARATH; B3 domain-containing protein At3g06220 | ||||
Swissprot | Q9M8K2 | 3e-62 | REM21_ARATH; B3 domain-containing protein REM21 | ||||
TrEMBL | R0H1D4 | 4e-68 | R0H1D4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470071.1 | 1e-118 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 4e-62 | B3 family protein |
Publications ? help Back to Top | |||
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