PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g016440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 342aa MW: 39473.1 Da PI: 7.0652 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.9 | 3.4e-15 | 9 | 51 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ien+ r + +Rr+g+lKK +ELS+LCd+++++iifs++ Csa16g016440.1 9 IENDKARARRLKQRREGLLKKVKELSILCDIRALLIIFSPNEA 51 99*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.671 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-6 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-16 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-18 | 3 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.27E-26 | 3 | 82 | No hit | No description |
Pfam | PF00319 | 3.6E-13 | 9 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-6 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-6 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MAKVKLAWIE NDKARARRLK QRREGLLKKV KELSILCDIR ALLIIFSPNE AVPMVWPSVE 60 MARGILDDFF ALPKFVQKQK ETGVKSILEE KMKTVHEQIM KSNEKKEYVV DELMMRLQHG 120 RGIDDLNLSE IHALLSFSKD KIILYRKKLN FMQFSTLRDP PVLPFEVQAE QLKITTNDAF 180 EGSGQDDDKK RKTDEEPRIF NIDTFRENKS YYLIDRWFLD PKPLEHVIYQ QMRNDNPNFV 240 SYFPYQGSGS NGNASLEMEP VSPQVMTFHG LVGSASQPLQ YCNMTNNAIM AMNQPIDLMS 300 RALERQDEGN NINNSEFYMT NNTATTNNDV RQEPPPNGNN R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 23 | RRLKQRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g016440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474003.1 | 0.0 | PREDICTED: MADS-box transcription factor 21-like | ||||
TrEMBL | A0A178VQF2 | 1e-131 | A0A178VQF2_ARATH; AGL48 | ||||
TrEMBL | Q9XEF1 | 1e-131 | Q9XEF1_ARATH; AGAMOUS-like 48 | ||||
STRING | XP_010474003.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 1e-135 | AGAMOUS-like 48 |