PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g016240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 350aa    MW: 37467.9 Da    PI: 9.7626
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g016240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.6e-3990150262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e alkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk +
  Csa16g016240.1  90 PEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGK 150
                     56789****************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3675145IPR003851Zinc finger, Dof-type
PfamPF027011.7E-3293148IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.68394148IPR003851Zinc finger, Dof-type
PROSITE patternPS01361096132IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVFSSVSSFL DPPINWPQTT NSNNHPHHLQ LQENGSLVSG HHQVLSHHFP QNPNPNHHHV  60
DTTAATSVDP GGLNGQAAER ARLAKNSQQP EGALKCPRCD SANTKFCYFN NYNLTQPRHF  120
CKACRRYWTR GGALRNVPVG GGCRRNKKGK SGNSKSSSSS SQNKPSTSMV NVTSPTATSN  180
VQHQTNTQFP FLPTLQNLTQ LGGIGLNLSP INGNNGGNGN TSSGYLNDLG FYHGGNTSGP  240
VMGNNNNNNN NNSNNGNNIM TSLGSANHFA LFDRTMGLYN FPNEGNMGLS SNGATRVSQT  300
APVKMEDNHL GNISRPASGL TSPGNQSNQY WTGQGLPGSS STDYHQHLM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g016240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0328770.0BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470045.10.0PREDICTED: dof zinc finger protein DOF2.2-like isoform X1
SwissprotQ9ZV330.0DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBLA0A178VZ400.0A0A178VZ40_ARATH; Uncharacterized protein
STRINGXP_010470045.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53361749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.11e-167Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]