PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g012580.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 355aa MW: 39331.2 Da PI: 7.1264

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g012580.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.8	1.9e-34	26	116	1	88
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg 88 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l +s+++++ ++++ s + +++++ Csa16g012580.1 26 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLEIAESTTSTHQepvTTKAGSPNLVFQREN 116 589*********************************************************9987744444222113222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-31	27	104	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.297	29	87	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV 60 QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ESTTSTHQEP VTTKAGSPNL VFQRENNNQT 120 QFVAANLDPE DAMKTFFPAT TTTSGGGGGT NMNFQNYPHH DDDNIVSRRT TTTPPNLSQD 180 LGLSLHPFQG NNNAVVVPET NSFTTTHFEP FGRISGWNHH DLTMTSSSSS EQQEDERSNG 240 GFMVNHQHQP SMMTLLNTQQ QQVFLGVQQQ QQQQRGTLQS SLFPHSFRSW DHQTTPDHHH 300 HQNQASPVMF ASPSQFGSHG MMMMQGLSFP NTTRLLHGEE ATQPNSSSSQ NSHL*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV  60
QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ESTTSTHQEP VTTKAGSPNL VFQRENNNQT  120
QFVAANLDPE DAMKTFFPAT TTTSGGGGGT NMNFQNYPHH DDDNIVSRRT TTTPPNLSQD  180
LGLSLHPFQG NNNAVVVPET NSFTTTHFEP FGRISGWNHH DLTMTSSSSS EQQEDERSNG  240
GFMVNHQHQP SMMTLLNTQQ QQVFLGVQQQ QQQQRGTLQS SLFPHSFRSW DHQTTPDHHH  300
HQNQASPVMF ASPSQFGSHG MMMMQGLSFP NTTRLLHGEE ATQPNSSSSQ NSHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-22	34	87	1	54	Putative transcription factor PCF6
5zkt_B	4e-22	34	87	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g012580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005311	0.0	AC005311.3 Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete sequence.
GenBank	AY059945	0.0	AY059945.1 Arabidopsis thaliana Unknown protein (At2g31070; T16B12.12) mRNA, complete cds.
GenBank	BT001194	0.0	BT001194.1 Arabidopsis thaliana Unknown protein (At2g31070) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469766.1	0.0	PREDICTED: transcription factor TCP10-like
Swissprot	O82277	1e-179	TCP10_ARATH; Transcription factor TCP10
TrEMBL	R0HQX6	0.0	R0HQX6_9BRAS; Uncharacterized protein
STRING	XP_010469766.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-151	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]