PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g012410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 414aa    MW: 46606.9 Da    PI: 4.9901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g012410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-11207249754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  Csa16g012410.1 207 TTERERRCHLNERYEALKLLIPSP-----SKGDRASILQDGIDYINEL 249
                     67*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.20E-11198254No hitNo description
Gene3DG3DSA:4.10.280.101.1E-11199258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13199269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.91200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-9206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8207249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MMDNNGGGFC EAETTIPVSH QFQPPLGSTT NSFNDDLKLP TMEDFSVFPS VISLPNSEPQ  60
DQSNNNNHMI NQMIQDSNWG VSADNSGFFM NTSDPNTAST QQIPDLLSLL HLPRCSIPLP  120
SSNVSDLMSG SCFAYDPLYH LNLPPQPPLI PANDYSGFLL GIDTNITTQR DDDSNVGNEI  180
NIDSGIIEFS KEIRRKGRGK RKNRPFTTER ERRCHLNERY EALKLLIPSP SKGDRASILQ  240
DGIDYINELR RRVSELKYLV ERKRYGGRHQ NNEVDNNNLD DQNNEDDVDD ENMNKKPESD  300
VTDQCSSNNS LRCSWLQRKS KASEVDVRIV DDEVTIKVAQ KKKINCLLLV SKVLDHLQLE  360
LHHVAGGQIG EHYSFLFNTK IYEGSTIYAS AIANRVIEVV DKHYMASLPI NNY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g012410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198090.0AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBankAK1184410.0AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBankBT0096750.0BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019094036.10.0PREDICTED: transcription factor bHLH91-like
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLR0HPE80.0R0HPE8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010469749.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]