PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g012330.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 866aa MW: 95944.4 Da PI: 5.9214

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g012330.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00078	562	599	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Csa16g012330.2 562 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 599 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.9E-31	6	160	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	7.54E-4	543	600	No hit	No description
PROSITE profile	PS50888	11.28	549	598	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-4	562	618	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-5	562	617	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF52058	3.74E-11	703	848	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	6.8E-13	704	757	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	6.8E-13	803	847	IPR032675	Leucine-rich repeat domain, L domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MGSSSQEILR SFCSNTDWNY AVFWKLNHRG SRMVLTLEDA YYGINNSPEV KDSGVIPKNM 60 HGVHDPLGLA VAKMSYHVYS LGEGIVGQVA VSGEHQWLFP EYYDNCLSEF EFHNVWESQI 120 SAGIKTILVV AVGPCGVVQL GSLRKVNEDV NLVNHIRQIF LALRDPLADH AANLMQCNMN 180 NSLCLPKIPS EGLHAKAFPD CSGEVDKAMD LDDSNILTQY KTRRRDSLPY DTPLSCLLME 240 NAAQVVGGRE VVQGSTCGSN SGVTYGFPTD LVDTKHENQI GTNIISDAPH VGMTSGCKDR 300 RGLDSTLQLY MKNHVLNNTS SSALAIEAER MITCQSYPGL DSTIHASSRT ENEVFQLSEN 360 HGNKDLKETE RILGRNCESS RFDALISPGY TFAGSELLEA FGSSFKQTST GQEELLKSEH 420 RSTIRPTDDI SHSQLTFDSG PENLLDAVVA NVCQSDGNAR DDMLSSRSGQ SLLTNMEVAE 480 PSGQKKHNVV NPVDSTMNHL PFVEMDTQQN SSDICGAFSS IGFSSTYPSS SSDQFQTSLD 540 IPKKNKKRAK PGESSRPRPR DRQLIQDRIK ELRELVPNGS KCSIDSLLER TIKHMLFLQN 600 VTKHADKLSK SAKTKMQQKE TGMQGSSCAV EVGGHLQVCS IIVENLNKQG MVLIEMLCEE 660 CSHFLEIANV IRSLDLVILR GITETQGEKT WICFVTEPED INRTFPFWLK ALPNLHVFTL 720 RSNRFFGHLS PPDQGPLAFP ELRILELSDS SFIGSLPPSY FVNRKTSTLN INGDGRIYMG 780 DYKNSYYIYE DTLDLQYKGL FMEQGKVLTS YSTIDFSGNK LEGQIPESIG LLKELIALNL 840 SNNAFTGHKS LRAYMIIVKL GVVEL*

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MGSSSQEILR SFCSNTDWNY AVFWKLNHRG SRMVLTLEDA YYGINNSPEV KDSGVIPKNM  60
HGVHDPLGLA VAKMSYHVYS LGEGIVGQVA VSGEHQWLFP EYYDNCLSEF EFHNVWESQI  120
SAGIKTILVV AVGPCGVVQL GSLRKVNEDV NLVNHIRQIF LALRDPLADH AANLMQCNMN  180
NSLCLPKIPS EGLHAKAFPD CSGEVDKAMD LDDSNILTQY KTRRRDSLPY DTPLSCLLME  240
NAAQVVGGRE VVQGSTCGSN SGVTYGFPTD LVDTKHENQI GTNIISDAPH VGMTSGCKDR  300
RGLDSTLQLY MKNHVLNNTS SSALAIEAER MITCQSYPGL DSTIHASSRT ENEVFQLSEN  360
HGNKDLKETE RILGRNCESS RFDALISPGY TFAGSELLEA FGSSFKQTST GQEELLKSEH  420
RSTIRPTDDI SHSQLTFDSG PENLLDAVVA NVCQSDGNAR DDMLSSRSGQ SLLTNMEVAE  480
PSGQKKHNVV NPVDSTMNHL PFVEMDTQQN SSDICGAFSS IGFSSTYPSS SSDQFQTSLD  540
IPKKNKKRAK PGESSRPRPR DRQLIQDRIK ELRELVPNGS KCSIDSLLER TIKHMLFLQN  600
VTKHADKLSK SAKTKMQQKE TGMQGSSCAV EVGGHLQVCS IIVENLNKQG MVLIEMLCEE  660
CSHFLEIANV IRSLDLVILR GITETQGEKT WICFVTEPED INRTFPFWLK ALPNLHVFTL  720
RSNRFFGHLS PPDQGPLAFP ELRILELSDS SFIGSLPPSY FVNRKTSTLN INGDGRIYMG  780
DYKNSYYIYE DTLDLQYKGL FMEQGKVLTS YSTIDFSGNK LEGQIPESIG LLKELIALNL  840
SNNAFTGHKS LRAYMIIVKL GVVEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g012330.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY231425	0.0	AY231425.1 Arabidopsis thaliana hypothetical protein (At2g31280/F16D14.12) mRNA, complete cds.
GenBank	AY954808	0.0	AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469739.1	0.0	PREDICTED: transcription factor bHLH155
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	R0HM95	0.0	R0HM95_9BRAS; Uncharacterized protein
STRING	XP_010469739.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]