PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g009840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 154aa    MW: 17053.3 Da    PI: 8.666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g009840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.0002838781055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + R d++ +++  L++l+ +      +K + a++L + ++YI+ Lq
  Csa16g009840.1 38 KERKDKLGERITALQQLVSPY-----GKTDTASVLLEGMQYIQFLQ 78
                    67899999**********999.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-92888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2612877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-113592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-53882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEYSRDSAGM MMENKRNVCS LEENSIKRHK SGLSLSSKER KDKLGERITA LQQLVSPYGK  60
TDTASVLLEG MQYIQFLQEQ VKVLSAPYLQ ATPTNTQELE EYSLRSRGLC LVPLEYTSGV  120
AQTNGADIWA PVKKTPTSST HAFNLSSSNS PFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g009840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760411e-142AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469680.11e-109PREDICTED: transcription factor bHLH113-like
RefseqXP_010469681.11e-109PREDICTED: transcription factor bHLH113-like
SwissprotQ7XJU16e-91BH154_ARATH; Transcription factor bHLH154
TrEMBLR0HEN72e-98R0HEN7_9BRAS; Uncharacterized protein
STRINGXP_010469680.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.12e-93bHLH family protein