PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g007740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 424aa    MW: 46978 Da    PI: 6.5062
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g007740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.7e-06846537
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     C+ ++e  + lfC+ ++  lC  C ++ H+       H
  Csa16g007740.1  8 ACDFCGERTAVLFCRADSAKLCLPCDQHVHSAnllskkH 46
                    6******99*******************99555555556 PP
2zf-B_box22.81.9e-074991339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     ++C+++++++++  C++++  lC++C    H +      H++
  Csa16g007740.1 49 SQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGScssasaHER 91
                    689************************9988844667777765 PP
3CCT63.56.7e-22378421144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+ktR+++K+irYe+RKa+Ae+R Rv+GrFvk++
  Csa16g007740.1 378 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVRGRFVKAT 421
                     899***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-12451IPR000315B-box-type zinc finger
PROSITE profilePS501199.599451IPR000315B-box-type zinc finger
CDDcd000213.01E-9739No hitNo description
PROSITE profilePS501199.2144794IPR000315B-box-type zinc finger
CDDcd000212.87E-75191No hitNo description
SMARTSM003361.35294IPR000315B-box-type zinc finger
PfamPF062034.5E-16378420IPR010402CCT domain
PROSITE profilePS5101714.852378420IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGSSTTVACD FCGERTAVLF CRADSAKLCL PCDQHVHSAN LLSKKHVRSQ ICDNCSKEPV  60
SVRCFTDNLV LCQECDWDVH GSCSSASAHE RSAVEGFSGC PSVSELAAVW GIDLEGKKKD  120
EDGEEEEERL TDNFGMALDS WVSGSNNIVQ DLIVPYDMSM KKQSFSFGRS KQVVYRQLEE  180
LLKRGFVSGE GEGDEDGDGD GDGGGEIMVR EGINGGGNIT QLSPTTSFTS LLLSAEYQSS  240
CGNAATQLYA ANHTTGHNNT QIWDFNLGKS RNHVELSQFE PKDSTFTFNN VTHIKNDPHP  300
TNLKAFRDSY QDESIRKNTI KGQETSKSNN IPAAIHSHKS SNDSSDLHFT EHVVKSSTNT  360
TRLVVATNAD LERMAQNRDN AMQRYKEKKK TRRYDKTIRY ETRKARAETR LRVRGRFVKA  420
TDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g007740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469462.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14 isoform X2
SwissprotO228000.0COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLR0HT150.0R0HT15_9BRAS; Uncharacterized protein
STRINGXP_010469461.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.20.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]