PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g007200.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WOX

Protein Properties

Length: 431aa MW: 47226.8 Da PI: 7.2958

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g007200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.5	1.7e-06	47	65	39	57
S-HHHHHHHHHHHHHHHHC CS Homeobox 39 LterqVkvWFqNrRakekk 57 + +++V++WFqNr+ + k+ Csa16g007200.1 47 VGDANVFYWFQNRKSRSKH 65 6789************995 PP
2	Wus_type_Homeobox	43	1.1e-14	42	66	40	64
Wus_type_Homeobox 40 eeyGkiedkNVfyWFQNrkaRerqk 64 +eyG+++d+NVfyWFQNrk+R+++k Csa16g007200.1 42 SEYGQVGDANVFYWFQNRKSRSKHK 66 69*********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSEYGQVGDA NVFYWFQNRK 60 SRSKHKLRLL HNHSKHSLPQ SQPQPQPQQQ PLSSANSASS SSSSSSSSSK STKPRKNKNK 120 NNTNLSLGSS QMMGTMFPPE AAFLFPVSTV GGFEGITVSS QLGFLSGDMI EQQKPAPTMG 180 PCTGLLLSEI MNGSVSYGTH HQQHLSEKED EEIRMKMLQQ PQPQICYATT SQQITCYNNN 240 NNIMLHVPPT TSTTTTITTS HSLATVPSTS DQLQQPQPQI CYATTSQQIT CYNNNNNIML 300 HVPPTTSTTT TITTSHSLAT VPSTSDQLQV QAGARIRVFI NEMELEVTPG PFNVRDAFGE 360 EVVLINSAAG ARIRVFINEM ELEVTPGPFN VRDAFGEEVV LINSAGQPIV TDEYGVALQP 420 LQHGASYYLI *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSEYGQVGDA NVFYWFQNRK  60
SRSKHKLRLL HNHSKHSLPQ SQPQPQPQQQ PLSSANSASS SSSSSSSSSK STKPRKNKNK  120
NNTNLSLGSS QMMGTMFPPE AAFLFPVSTV GGFEGITVSS QLGFLSGDMI EQQKPAPTMG  180
PCTGLLLSEI MNGSVSYGTH HQQHLSEKED EEIRMKMLQQ PQPQICYATT SQQITCYNNN  240
NNIMLHVPPT TSTTTTITTS HSLATVPSTS DQLQQPQPQI CYATTSQQIT CYNNNNNIML  300
HVPPTTSTTT TITTSHSLAT VPSTSDQLQV QAGARIRVFI NEMELEVTPG PFNVRDAFGE  360
EVVLINSAAG ARIRVFINEM ELEVTPGPFN VRDAFGEEVV LINSAGQPIV TDEYGVALQP  420
LQHGASYYLI *

Functional Description ? help Back to Top
Source	Description
UniProt	Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269\|PubMed:15753038, ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:20110319, ECO:0000269\|PubMed:21057190, ECO:0000303\|PubMed:21185286}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g007200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269\|PubMed:21316593}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118501	0.0	AK118501.1 Arabidopsis thaliana At2g33880 mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL19-73-K21.
GenBank	AY251401	0.0	AY251401.1 Arabidopsis thaliana WOX9 protein mRNA, complete cds.
GenBank	BT005296	0.0	BT005296.1 Arabidopsis thaliana At2g33880 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	U78721	0.0	U78721.3 Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010473852.1	1e-174	PREDICTED: WUSCHEL-related homeobox 9
Swissprot	Q6X7J4	1e-148	WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBL	R0G0R0	1e-156	R0G0R0_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010473852.1	1e-174	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7206	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	7e-90	homeobox-3

Publications ? help Back to Top
Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374]