PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g006390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 931aa    MW: 102667 Da    PI: 5.2924
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g006390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.63e-29571621252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  Csa16g006390.1 571 EKNVSLNVLQHYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 621
                     89***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.904555641IPR003035RWP-RK domain
PfamPF020421.6E-26573621IPR003035RWP-RK domain
SuperFamilySSF542772.94E-21817914No hitNo description
Gene3DG3DSA:3.10.20.2409.3E-22825908No hitNo description
SMARTSM006662.3E-21828911IPR000270PB1 domain
PROSITE profilePS5174518.48828906IPR000270PB1 domain
CDDcd064074.54E-31829910No hitNo description
PfamPF005647.0E-16829910IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 931 aa     Download sequence    Send to blast
MENPSREKGF CFPDTPVEEM EMDGWIKSLI FEEDMLSSSS STSELMNFES FASWCNNIPS  60
AATDILFSQY GLSTSQSTTS FGGHSYVGEK RPVHEMSSQF HCLSDTEKIT GKRIRGNNTN  120
QTSSLTTGAV DYSVVPRSLS HTLDDKMIKA LSLFMEFSGE GILAQFWTPI KKGDQYMLST  180
CDQAYLLDSR LSGYREVSRN FTFSAEANQC SYPGLPGRVF ISGVPEWTSN VMYYKTAEYL  240
RMKHALDNDV RGSIAIPILE ASGSSCCAVL ELVTCREKPN FDVEMDSVCR ALQAVNLQTS  300
TIPRRQYLSS NQKEALAEIR DVLRAVCHAH SLPLALAWIP CSYSKGANNE SVKVYGKNSR  360
ETSLLCIEET ACYVNDMEME DYVNACLEHN LREGQGIVGK ALISNKPSFS SDVKTFNICE  420
YPLVQHARKF GLNAAVATKL RSTFTGDSDY ILEFFLPVSM KGSSEQQLLL DSLSSTMQRL  480
CRTLRTVSDA ESNEVMEVGF HGGETSNLPQ ATTVSEESFQ TTFLDTDVNS TTSIFSNMSS  540
DKTNDIAGSQ GTLQQEISGT KRSEKKKSST EKNVSLNVLQ HYFSGSLKDA AKSLGVCPTT  600
LKRICRQHGI MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDSVTGE FVAVGPFIQE  660
FDTQKSTSSH HEDVFVRSQS GMDEDASLEP LTVISHDGGG VKLEESVETN QAGPGSLMEP  720
WTWISKQSGL NYSDDIDIGK RSEEVKKDKD LCVRRCLSSL ALAGDGTNTR TERGNGIVEP  780
NQSISSSMSD SSNSSGAVLL GRSSTSMEKN WNQIRTHNNS GESGSSSTLT VKATYRDDTV  840
RFKLDPYLVG CSQLYREVAK RFKLQEGAFR LKYLDDEEEW VMLVTDSDLH ECFELLNGMR  900
KYTVKFLVSD LPSTAMGSSA GSNGCLGTGS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g006390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2206740.0AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBankBT0104590.0BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469302.10.0PREDICTED: protein NLP9-like
SwissprotQ9M1B00.0NLP9_ARATH; Protein NLP9
TrEMBLR0FN830.0R0FN83_9BRAS; Uncharacterized protein
STRINGXP_010469302.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein