PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g006390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 931aa MW: 102667 Da PI: 5.2924 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.6 | 3e-29 | 571 | 621 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Csa16g006390.1 571 EKNVSLNVLQHYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 621 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.904 | 555 | 641 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-26 | 573 | 621 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.94E-21 | 817 | 914 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 9.3E-22 | 825 | 908 | No hit | No description |
SMART | SM00666 | 2.3E-21 | 828 | 911 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 18.48 | 828 | 906 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.54E-31 | 829 | 910 | No hit | No description |
Pfam | PF00564 | 7.0E-16 | 829 | 910 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 931 aa Download sequence Send to blast |
MENPSREKGF CFPDTPVEEM EMDGWIKSLI FEEDMLSSSS STSELMNFES FASWCNNIPS 60 AATDILFSQY GLSTSQSTTS FGGHSYVGEK RPVHEMSSQF HCLSDTEKIT GKRIRGNNTN 120 QTSSLTTGAV DYSVVPRSLS HTLDDKMIKA LSLFMEFSGE GILAQFWTPI KKGDQYMLST 180 CDQAYLLDSR LSGYREVSRN FTFSAEANQC SYPGLPGRVF ISGVPEWTSN VMYYKTAEYL 240 RMKHALDNDV RGSIAIPILE ASGSSCCAVL ELVTCREKPN FDVEMDSVCR ALQAVNLQTS 300 TIPRRQYLSS NQKEALAEIR DVLRAVCHAH SLPLALAWIP CSYSKGANNE SVKVYGKNSR 360 ETSLLCIEET ACYVNDMEME DYVNACLEHN LREGQGIVGK ALISNKPSFS SDVKTFNICE 420 YPLVQHARKF GLNAAVATKL RSTFTGDSDY ILEFFLPVSM KGSSEQQLLL DSLSSTMQRL 480 CRTLRTVSDA ESNEVMEVGF HGGETSNLPQ ATTVSEESFQ TTFLDTDVNS TTSIFSNMSS 540 DKTNDIAGSQ GTLQQEISGT KRSEKKKSST EKNVSLNVLQ HYFSGSLKDA AKSLGVCPTT 600 LKRICRQHGI MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDSVTGE FVAVGPFIQE 660 FDTQKSTSSH HEDVFVRSQS GMDEDASLEP LTVISHDGGG VKLEESVETN QAGPGSLMEP 720 WTWISKQSGL NYSDDIDIGK RSEEVKKDKD LCVRRCLSSL ALAGDGTNTR TERGNGIVEP 780 NQSISSSMSD SSNSSGAVLL GRSSTSMEKN WNQIRTHNNS GESGSSSTLT VKATYRDDTV 840 RFKLDPYLVG CSQLYREVAK RFKLQEGAFR LKYLDDEEEW VMLVTDSDLH ECFELLNGMR 900 KYTVKFLVSD LPSTAMGSSA GSNGCLGTGS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g006390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK220674 | 0.0 | AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11. | |||
GenBank | BT010459 | 0.0 | BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010469302.1 | 0.0 | PREDICTED: protein NLP9-like | ||||
Swissprot | Q9M1B0 | 0.0 | NLP9_ARATH; Protein NLP9 | ||||
TrEMBL | R0FN83 | 0.0 | R0FN83_9BRAS; Uncharacterized protein | ||||
STRING | XP_010469302.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2299 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 0.0 | Nin-like family protein |