PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g003510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 269aa    MW: 30417 Da    PI: 4.4407
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g003510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-1818921797
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     +p +f+e+   +   + t +l+ + gr W+v +  +k ++++++t+GW++F+++++L +g+ ++F +dg+++f   v+vf
  Csa16g003510.1 18 AIPLSFMEHLADP--LPNTAKLQGTGGRDWTVSM--KKIRDGVYFTAGWSKFAQDHELVDGEYLTFVYDGNRTF--EVSVF 92
                    69*****666645..889****************..*********************************98888..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.197195IPR003340B3 DNA binding domain
CDDcd100176.59E-171392No hitNo description
SMARTSM010194.5E-151595IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-201596IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-201794IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-151892IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-8169260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-6169260IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.49173263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAEPEHDDDV LLPRFFKAIP LSFMEHLADP LPNTAKLQGT GGRDWTVSMK KIRDGVYFTA  60
GWSKFAQDHE LVDGEYLTFV YDGNRTFEVS VFGRLGCKET RAETETLELS GSSSDSEEDE  120
EEPPTDVDYD ISLGEDEEIS QSLYPLEEEE TESDAAAVFE GNVDIKALTN PHFPTTLKDR  180
NTELIIPASV VRENELIFGD SVKYIDGEGT LVGLRCKWAL EKVCFKGWNR ICRRNRLKKH  240
QDTVECELLH DREKMVHSIR VHVIRGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-18199726104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g003510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019094016.10.0PREDICTED: B3 domain-containing protein REM20-like
RefseqXP_019094017.10.0PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV51e-114REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM71e-147R0HPM7_9BRAS; Uncharacterized protein
STRINGXP_010469086.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-110B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]