PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g003090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 806aa    MW: 87349.4 Da    PI: 6.6994
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g003090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.6e-20134189156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Csa16g003090.1 134 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 189
                     688999***********************************************999 PP
2START168.74e-5332353014206
                     HHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......E CS
           START  14 alaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......g 89 
                      + ++p+Wv+ss    + +n++e+ ++f++  +     + +ea+++sg v+ ++  lve+l+d+  +W e+++    + +t+e issg      g
  Csa16g003090.1 323 PSTRDPLWVRSSdtgfDVLNREEYDTSFSRCVGpkpdgFVSEASKESGTVIINSLALVETLMDSE-RWAEMFPsmisRTSTTEIISSGmggtrnG 416
                     56789*******999988888888888866444888999**************************.*******9999****************** PP

                     EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
           START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                     al+lm+ae+q+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+skvtw+eh++++++  h l+r+
  Csa16g003090.1 417 ALHLMQAEFQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGYSKVTWIEHTEYDENRTHRLYRP 507
                     ************************************************9.777766...************************************ PP

                     HHHHHHHHHHHHHHHHTXXXXXX CS
           START 184 lvksglaegaktwvatlqrqcek 206
                     l++ gla+ga +w+a+lqrqce+
  Csa16g003090.1 508 LLSCGLAFGAHRWMAALQRQCEC 530
                     *********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-19122191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-20125191IPR009057Homeodomain-like
PROSITE profilePS5007117.07131191IPR001356Homeobox domain
SMARTSM003891.9E-18132195IPR001356Homeobox domain
PfamPF000461.8E-17134189IPR001356Homeobox domain
CDDcd000861.14E-17134191No hitNo description
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
SMARTSM002341.4E-39310530IPR002913START domain
PfamPF018523.1E-45325530IPR002913START domain
PROSITE profilePS5084832.714325533IPR002913START domain
CDDcd088752.85E-101328529No hitNo description
SuperFamilySSF559611.15E-26330530No hitNo description
SuperFamilySSF559614.67E-18559729No hitNo description
SuperFamilySSF559614.67E-18757797No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MNFNGFLDNT SSGVDGAGAS KLLSDVPYNN NHHFSFSAVD TMLGTTAAIT PSLHSRTPNS  60
RPFSSHGLSL GLTNGEMSRN GEVLLESNVT REKKTSRGGG EDVTTESRSE SDNAEAVSGD  120
DLDTSDDRPP FKKKKRYHRH TPKQIQDLES VFKECAHPDE KQRLDLSRRL NLDPRQVKFW  180
FQNRRTQMKT QIERHENALL RQENDKLRAE NMSVREAMRN PMCGNCGGPA VLADISMEEQ  240
HLRIENSRLK DELDRVCALT GKFLGRSNGS HYIPDSALVL GVGVGSAGCN GGAGGGGFTL  300
SSPRFEISNG TGSGLASVNH HQPSTRDPLW VRSSDTGFDV LNREEYDTSF SRCVGPKPDG  360
FVSEASKESG TVIINSLALV ETLMDSERWA EMFPSMISRT STTEIISSGM GGTRNGALHL  420
MQAEFQLLSP LVPVRQVSFL RFCKQHAEGV WAVVDVSIDS IREGSSSSCR RLPSGCLVQD  480
MANGYSKVTW IEHTEYDENR THRLYRPLLS CGLAFGAHRW MAALQRQCEC LTILMSSTVS  540
PSPSPTPINC NGRKSMLKLA KRMTDNFCGG VCASSLQKWS KLNVGNVDED VRIMTRKSVN  600
IPGEPPGIVL NAATSVWMPV SPRRLFDFLG NEGLRSEWDI LSNGGPMKEM AHIAKGHDHS  660
NSVSLLRASA VNANQSSMLI LQETSIDAAG ALVVYAPVDI PAMQAVMNGG DSAYVALLPS  720
GFAILPNAQA GTQRCATEEP NGNGNGNGNG GMCMEEGGSL LTVAFQILVN SLPTAKLTVE  780
SVETVNNLIS CTVQMIKAAL HCDST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g003090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508660.0AY050866.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
GenBankAY0967570.0AY096757.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469038.10.0PREDICTED: homeobox-leucine zipper protein HDG1 isoform X3
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLR0FNB90.0R0FNB9_9BRAS; Uncharacterized protein
STRINGXP_010469036.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]