PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g002980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 591aa MW: 66540.6 Da PI: 7.3707 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.5e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv++++L +gD +vF + + Csa16g002980.1 128 FVKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFL--RGE 218 89****************************9543..445569************************************************..348 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++ l+v+v+r Csa16g002980.1 219 NGDLRVGVRR 228 8889***998 PP | |||||||
2 | Auxin_resp | 95.5 | 8.3e-32 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ +k++F v+Y+Pr s+F+v v+k+++a+k+ +s+G+Rf+m+fe+e+s+er ++Gt+vg+ dl++ +Wp SkWrsL+ Csa16g002980.1 254 ASHAVGSKTMFVVFYKPRI--SQFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERIFTGTIVGTGDLSS-EWPASKWRSLQ 333 6899**************8..9**********************************************777.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-40 | 113 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-38 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-19 | 126 | 228 | No hit | No description |
Pfam | PF02362 | 3.1E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.083 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-20 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-29 | 254 | 333 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.9E-8 | 479 | 525 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.01E-13 | 486 | 565 | No hit | No description |
PROSITE profile | PS51745 | 26.293 | 489 | 581 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.1E-5 | 535 | 574 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MASVESDDDF RTSLSRSYED QLYTELWKAC AGPLVEVPRA EERVFYFPQG HMEQLVASTN 60 QGIKSEEIPK FIFPPKILCR VLNVTLKAGH ETDEVYAQIT LKPEEHQIEP TSLDPPLVEP 120 AKQMFHSFVK ILTASDTSTH GGFSVLRKHA TECLPALDMT QATPTQELVT RDLHGFEWRF 180 KHIFRGQPRR HLLTTGWSTF VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV 240 ISSQSMHLGV LATASHAVGS KTMFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF 300 EGEESPERIF TGTIVGTGDL SSEWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLPTS 360 PITTPAQQPQ SKCKRSRPIE PSVITPAPPS FLYSFPQSQD PANASLQLFQ DPSLERSSGG 420 YSSNNSLIAE TPPPPTSGCY RLFGFDLPSN PPAPIFSDKQ LNDTYGTAKC QEPITPTSKN 480 EQKKQQTSKS RTKVQMQGIA VGRAVDLTLL KSYDELIKEL ERMFEIQGQL RPRDKWVVVF 540 TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKR KLSSSLENEE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-159 | 20 | 356 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-159 | 20 | 356 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-159 | 20 | 356 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-159 | 20 | 356 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-159 | 20 | 356 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g002980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334717 | 0.0 | AF334717.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds. | |||
GenBank | AY059746 | 0.0 | AY059746.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds. | |||
GenBank | AY070463 | 0.0 | AY070463.1 Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds. | |||
GenBank | AY091392 | 0.0 | AY091392.1 Arabidopsis thaliana putative auxin response factor protein (At3g61830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010469026.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X2 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | R0FT39 | 0.0 | R0FT39_9BRAS; Auxin response factor | ||||
STRING | XP_010469026.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Publications ? help Back to Top | |||
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