PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g002770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 239aa    MW: 27960 Da    PI: 4.9109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g002770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-183384556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +f++eq++ Le+ Fe++  +  +++ + A++lgL+ rqV +WFqN+Ra++k
  Csa16g002770.1 33 KRFSEEQIKSLERIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 84
                    68*************************************************9 PP
2HD-ZIP_I/II119.12.5e-3831122293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +++r+s+eq+k+LE+ Fe+e++Lep++Kv++areLglqprqva+WFqn+RAR+ktkqlEk+y+ L+++y +l+++ + ++ke+++L +el++
  Csa16g002770.1  31 NQKRFSEEQIKSLERIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNILRANYSNLASQFDIMKKEKQALVSELQR 122
                     589*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.34E-171488IPR009057Homeodomain-like
SMARTSM003891.4E-132390IPR001356Homeobox domain
PROSITE profilePS5007117.0062686IPR001356Homeobox domain
CDDcd000861.02E-133287No hitNo description
PfamPF000462.5E-153384IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-173393IPR009057Homeodomain-like
PRINTSPR000312.8E-55766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000312.8E-56682IPR000047Helix-turn-helix motif
PfamPF021832.2E-1586126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEEGDFFNCC FSETNSGMTM MNKKKMKKSY NQKRFSEEQI KSLERIFESE TRLEPRKKVQ  60
VARELGLQPR QVAIWFQNKR ARWKTKQLEK EYNILRANYS NLASQFDIMK KEKQALVSEL  120
QRLNEEIHNK PKEERDHECC GEQGVALSSS TESHNGKCEP EVRLNQGIVL CNDDGDNNNI  180
KTEYFGFEEE TDHHELMNIV EQPDDSCLTS SDNWGGFNSD SLLDQSSSNY PNWWEFWT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g002770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598280.0AY059828.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (F21F14.6) mRNA, complete cds.
GenBankAY0871870.0AY087187.1 Arabidopsis thaliana clone 32615 mRNA, complete sequence.
GenBankBT0022060.0BT002206.1 Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (At3g61890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469008.11e-178PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotQ9M2761e-129ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLR0H5X01e-134R0H5X0_9BRAS; Uncharacterized protein
STRINGXP_010469008.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-127homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]