PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g002710.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 352aa MW: 39922.1 Da PI: 7.3648

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g002710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	173	223	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr llP++ + ++ + a+i+ A++Y+k L Csa16g002710.1 173 QRVNHIAVERNRRRQMNEHISSLRALLPPS---YIQRGDQASIVGGAINYVKVL 223 79**************************...9***************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.23E-12	171	228	No hit	No description
SuperFamily	SSF47459	8.9E-17	172	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.574	172	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-13	173	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-11	173	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-10	178	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MERFQGHINP CFSNRKADVK SLEVQGFAEV QSFAIKEEEE SLQDTVPFLQ MLQSEDPSSF 60 FTIKEPNFLT LLSSLQTVKE PWELEHYPEF HSPVRFPISA SSMEGTNQAL SSQEIFLSQA 120 NMTLPSSTSS PPLTANSRRK RKTNNLLPQE MAREKRRRRK TKPSKNIEEI EHQRVNHIAV 180 ERNRRRQMNE HISSLRALLP PSYIQRGDQA SIVGGAINYV KVLEQIIQSL ETQKRRQQSS 240 EGNASNHLSG ISSNELWTTR EDQSCIPKIE ATVIQNHVSL KVECLKKQGQ LLEGIVSLEK 300 LRLTVLHLNI TSSSHSSVSY SFQLKMEDDC ELESADKITA AVHQIFDIPT I*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MERFQGHINP CFSNRKADVK SLEVQGFAEV QSFAIKEEEE SLQDTVPFLQ MLQSEDPSSF  60
FTIKEPNFLT LLSSLQTVKE PWELEHYPEF HSPVRFPISA SSMEGTNQAL SSQEIFLSQA  120
NMTLPSSTSS PPLTANSRRK RKTNNLLPQE MAREKRRRRK TKPSKNIEEI EHQRVNHIAV  180
ERNRRRQMNE HISSLRALLP PSYIQRGDQA SIVGGAINYV KVLEQIIQSL ETQKRRQQSS  240
EGNASNHLSG ISSNELWTTR EDQSCIPKIE ATVIQNHVSL KVECLKKQGQ LLEGIVSLEK  300
LRLTVLHLNI TSSSHSSVSY SFQLKMEDDC ELESADKITA AVHQIFDIPT I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	159	KRKTNNLLPQEMAREKRRRRK
2	154	159	KRRRRK
3	156	161	RRRKTK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g002710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630481	0.0	AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBank	AK118527	0.0	AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBank	BT005298	0.0	BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010469002.1	0.0	PREDICTED: transcription factor bHLH67-like
Swissprot	Q700E4	0.0	BH067_ARATH; Transcription factor bHLH67
TrEMBL	R0H7K9	0.0	R0H7K9_9BRAS; Uncharacterized protein
STRING	XP_010469002.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]