PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g076860.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 29329.2 Da PI: 7.4492 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 119 | 165 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++ Lq Csa15g076860.2 119 HSLAERARREKISKKMKYLQDIVPGC----NKVTGKAGMLDEIINYVQCLQ 165 999**********************9....677***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.04E-7 | 112 | 169 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-16 | 112 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.284 | 114 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 115 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-6 | 119 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-8 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGYGPQHEAM DGCISRTSSC QMEPVDTMEG LLKNGTEEDR PISLKNKRKQ EVKTREEEKT 60 EKKIKVEADT ESSMKGKSNM RNREASSETS KETLKGVSEI PKLDYIHVRA RRGQATDRHS 120 LAERARREKI SKKMKYLQDI VPGCNKVTGK AGMLDEIINY VQCLQRQVEF LSMKLAVLNP 180 ELELAVEDVS VKQFQAYFTN VVGSSKHSIM VDVPLFPLDQ QGSLDLSAIN PNQTTSIEAP 240 SASWESQSQS LYNTSSLGFQ Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g076860.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF412099 | 0.0 | AF412099.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds. | |||
GenBank | AY078030 | 0.0 | AY078030.1 Arabidopsis thaliana At2g18300/T30D6.19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489535.1 | 0.0 | PREDICTED: transcription factor HBI1-like isoform X1 | ||||
Refseq | XP_019092491.1 | 0.0 | PREDICTED: transcription factor HBI1-like isoform X1 | ||||
Swissprot | Q9ZPW3 | 1e-163 | HBI1_ARATH; Transcription factor HBI1 | ||||
TrEMBL | D7LBA7 | 1e-162 | D7LBA7_ARALL; Basic helix-loop-helix family protein | ||||
STRING | XP_010468729.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010489535.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 1e-148 | bHLH family protein |