PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g074220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 917aa MW: 101522 Da PI: 4.7865

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g074220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.9	2e-28	611	661	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l+++F++++kdAAk++gvc+T+LKriCRqyGI+RWP+Rkik++ Csa15g074220.1 611 EKTIGLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQYGIMRWPSRKIKKV 661 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	600	681	IPR003035	RWP-RK domain
Pfam	PF02042	9.0E-25	614	661	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.17E-23	808	903	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.4E-24	816	898	No hit	No description
SMART	SM00666	1.5E-25	818	901	IPR000270	PB1 domain
PROSITE profile	PS51745	24.191	818	901	IPR000270	PB1 domain
CDD	cd06407	2.75E-40	819	900	No hit	No description
Pfam	PF00564	5.3E-16	819	900	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MEDDGGGDGG EGNGGFSPNS SFGAFPDTAM DLDFMDELLF DGCWLETTDN KNLKQTEQSG 60 SASTAMNDNS TFLCFGENPS QDNEETENNK SMNQESFNQA EKFLLEEAEL GKSWWIAPRA 120 SEGPSSSVKE RLLQAISGLN ETVQDKDFLV QIWVPVQQEG KSFLTTWAQP HLFNQEYSSL 180 AEYRHVSETY NFPADEGMND YVGLPGRVFL QKLPEWTPDV RFFRRDEYPR IKEARKCDVR 240 GSLALPVFER GSGICLGVVE IVTTTQKMNY RQELEKMCKA LEAVDLRSSS NLNTPSSEFL 300 QVYKDFYCAA LPEIKDFLAT VCRSYDLPLA LSWAPCAPQG KRGSRHSDEN FSQCVSTTDS 360 ACSVPDEQSK SFWEACSEHH LLQGEGIVGK AFEATKLFFV PEVATFSKTN YPLAHHAKIS 420 GLHAALAVPL KSKSGLVEFV LEFFFPKACL DTEAQQEMLK SLSVTLQQDF RSSNLVIDKD 480 LELEVVLPVR ETMLFSENPL SGAETAETLT GIQMQESSWI SHMIKANEKG KDVSLSWEYQ 540 KEDPKELSSG RENHQLDPSP NNVPLEAEQF QQASTSGLRV DSGPSTETPS TGGKNMSGSR 600 RPGEKRRTKT EKTIGLEVLR QHFAGSLKDA AKSIGVCPTT LKRICRQYGI MRWPSRKIKK 660 VGHSLKKLQL VMDSVQGAQG TIQLDSFYTS FPELNSPNMS SNGPSLKSNE QSSHLNAQTE 720 NGIMAEENTA PRSPSSSCTK SSGSSNNNEN TANILVSEDA DAALKRAQSE MELHQVNQEE 780 TNCPGRTQSH TTLKESPVLE NLPPSPGSSN KSLRAGGAIK VKATFGEARI RFTLLPSCGF 840 RELQQEIARR FNIDDISWFD LKYLDDDKEW VLLTCEADLD ECIDIYRLTQ TQTIKISLNE 900 ASQVKLGGSF GSTGPS*

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MEDDGGGDGG EGNGGFSPNS SFGAFPDTAM DLDFMDELLF DGCWLETTDN KNLKQTEQSG  60
SASTAMNDNS TFLCFGENPS QDNEETENNK SMNQESFNQA EKFLLEEAEL GKSWWIAPRA  120
SEGPSSSVKE RLLQAISGLN ETVQDKDFLV QIWVPVQQEG KSFLTTWAQP HLFNQEYSSL  180
AEYRHVSETY NFPADEGMND YVGLPGRVFL QKLPEWTPDV RFFRRDEYPR IKEARKCDVR  240
GSLALPVFER GSGICLGVVE IVTTTQKMNY RQELEKMCKA LEAVDLRSSS NLNTPSSEFL  300
QVYKDFYCAA LPEIKDFLAT VCRSYDLPLA LSWAPCAPQG KRGSRHSDEN FSQCVSTTDS  360
ACSVPDEQSK SFWEACSEHH LLQGEGIVGK AFEATKLFFV PEVATFSKTN YPLAHHAKIS  420
GLHAALAVPL KSKSGLVEFV LEFFFPKACL DTEAQQEMLK SLSVTLQQDF RSSNLVIDKD  480
LELEVVLPVR ETMLFSENPL SGAETAETLT GIQMQESSWI SHMIKANEKG KDVSLSWEYQ  540
KEDPKELSSG RENHQLDPSP NNVPLEAEQF QQASTSGLRV DSGPSTETPS TGGKNMSGSR  600
RPGEKRRTKT EKTIGLEVLR QHFAGSLKDA AKSIGVCPTT LKRICRQYGI MRWPSRKIKK  660
VGHSLKKLQL VMDSVQGAQG TIQLDSFYTS FPELNSPNMS SNGPSLKSNE QSSHLNAQTE  720
NGIMAEENTA PRSPSSSCTK SSGSSNNNEN TANILVSEDA DAALKRAQSE MELHQVNQEE  780
TNCPGRTQSH TTLKESPVLE NLPPSPGSSN KSLRAGGAIK VKATFGEARI RFTLLPSCGF  840
RELQQEIARR FNIDDISWFD LKYLDDDKEW VLLTCEADLD ECIDIYRLTQ TQTIKISLNE  900
ASQVKLGGSF GSTGPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g074220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY090943	0.0	AY090943.1 Arabidopsis thaliana At2g17150 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010467467.1	0.0	PREDICTED: protein NLP1
Refseq	XP_010467468.1	0.0	PREDICTED: protein NLP1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	R0G2Z6	0.0	R0G2Z6_9BRAS; Uncharacterized protein
STRING	XP_010467467.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]