PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g073800.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 624aa MW: 70818.3 Da PI: 4.7601 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 370 | 415 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ErrRR+++N+++ Lr+l+P+ +Kl+ a+iL A++Y+k+Lq Csa15g073800.2 370 NLMAERRRRKKLNDRLYALRSLVPTI-----TKLDRASILGDAINYVKELQ 415 5589*********************7.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.2E-17 | 67 | 205 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.704 | 365 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-14 | 367 | 417 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-18 | 368 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-11 | 370 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-16 | 371 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 372 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MEVISCYLFI LLLVLLLSCN LLFSFATSSW LSLVKFSAVT RFLRSLVFSE NLVNQFERMG 60 SNMNLLEKLR PLVGERAWDY CVLWRLNEDQ RFVKWIGCCC GGTELIAENG TEEFSFGGCR 120 DVMFHHPRTK SCESLSHLPS SIPLDSGIYA ETLLTNQTGW LSESSEPSFM QETICTRVLI 180 PISGGLVELF ATRHVAEDQN VVDFVMGHCN MLMDETVTIN MMAADEVESK PYGMLSGEIN 240 QKGSKDEDIM NLPSSYDISS DQIRLNFLPQ MSDYEAQQHL KMKSDYHQQA LGYLPENTNK 300 EMMGLNPFNT MADDVMGEPS LLVNEQQVAN DKEMNENGRL DSGSDCSDQI DDEDDPKYKK 360 KSGKGSQAKN LMAERRRRKK LNDRLYALRS LVPTITKLDR ASILGDAINY VKELQNEAKE 420 LQDELEENSE TEDGSNRQQG GMSLNGTVVT GFHPGLSCNS NVPNVKQDVD LDNSNDKGQE 480 MEPQVDVAQL DGREFFVKVI CEYKPGGFTR LMEALDSLGL EVTNANTTRY LSLVSNVFKV 540 EKNDNEMVQA EHVRNSLLEI TRNTSRGWHD DQMATGSMQN EKNEVDFQQY DDHQHHHHPF 600 DHQMNQSTHH HHHHQHINPY HNQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 358 | 379 | KKKSGKGSQAKNLMAERRRRKK |
2 | 373 | 380 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g073800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488565 | 0.0 | AF488565.1 Arabidopsis thaliana clone bHLH021 putative bHLH transcription factor mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010467425.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES | ||||
Swissprot | Q9ZVX2 | 0.0 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | R0I4J3 | 0.0 | R0I4J3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010467425.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 0.0 | bHLH family protein |