PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g072290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 1260aa    MW: 139292 Da    PI: 9.2392
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g072290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97e-0812351258225
                      -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaH 25  
                      +++ C+ff+++G+C+ G++C++ H
  Csa15g072290.1 1235 GQRVCKFFRENGHCRKGASCNYLH 1258
                      6899******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.245.102.7E-24101194IPR003121SWIB/MDM2 domain
SuperFamilySSF475922.01E-20104191IPR003121SWIB/MDM2 domain
SMARTSM001510.0056126191IPR019835SWIB domain
PfamPF022015.8E-13131186IPR003121SWIB/MDM2 domain
SMARTSM007199.0E-14248375IPR004343Plus-3 domain
PROSITE profilePS513609.694248400IPR004343Plus-3 domain
SuperFamilySSF1590422.22E-13249310IPR004343Plus-3 domain
PfamPF031265.4E-11253366IPR004343Plus-3 domain
SMARTSM001514.3E-4291367IPR019835SWIB domain
SuperFamilySSF475921.31E-17297367IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.108.4E-21298370IPR003121SWIB/MDM2 domain
PfamPF022014.9E-15298362IPR003121SWIB/MDM2 domain
PROSITE profilePS5136020.883424565IPR004343Plus-3 domain
SMARTSM007192.7E-48424542IPR004343Plus-3 domain
SuperFamilySSF1590421.96E-30425562IPR004343Plus-3 domain
PfamPF031261.2E-20429522IPR004343Plus-3 domain
SuperFamilySSF552772.35E-18749815IPR003169GYF domain
CDDcd000721.88E-18762819No hitNo description
PROSITE profilePS5082916.518762816IPR003169GYF domain
SMARTSM004441.3E-23763818IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.2E-17764816IPR003169GYF domain
PfamPF022139.6E-14764803IPR003169GYF domain
PROSITE profilePS5010314.66212331259IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-512351258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-512371259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1260 aa     Download sequence    Send to blast
MTVFFSDLSL MSFCLLQAQL DFDDKTSWEY LFKDYWIDLK TQLSLSPEEL DQAKSPRKGH  60
ESNASKQGTA SEADYVTDGG SDSDSSPKKR KTRSRSKSGS PANKNFSGEE WASKELLDVI  120
VHMRRGDRSF VPESEVQNLL LAYIKRYNLR DPRRKSQVIC DSRLQNLFGK SHVGHFEMLN  180
LLDSHLLKKE QNQSDDIQSD IADTEEPNHV DVDENSDHPM KSGKDKKRKT RKKSVRKGRQ  240
SNLDDFAAVD LHNINLIYLR RSLVEDLLED SAAFEEKVAS AFVRLRISGN QKQDIYRLVQ  300
VVGTSKXPES EVQNLLLAYI KRYNLRDPRR KSQVICDSRL QNLFGKTHVG HFEMLNLLDS  360
HLLKKEQNQS DDIQSDIADT EEPNHVDVDE NSDHPMKSGK DKKRKTRKKS VRKGRQSNLD  420
DFAAVDLHNI NLIYLRRSLV EDLLEDSAAF EEKVASAFVR LRISGNQKQD IYRLVQVVGT  480
SKSPEPYKVG KKTTDFVLEI LNLDKTEVVS IDIISNQDFT EVTYIRCPFL DECKRLKQSI  540
KCGLINRLTV GGIQEKAIAL QEVRVKNKQA QAVNXDRASD MGRRKEYPYL LKFTKIPEIH  600
ADPKMDPDCE SEDEDEKEEM EKEKQLRPRS SSFNKRGRDP ISPRKGGFSS NESWTGTSNY  660
SKTSANRELS RSYSGRGSNG RGDYLGSSDD MVSENMWPSA REREVQPSLG SEKPRSVSIP  720
ETTPRSSRAV APPELSPRIA PEIPTAPPAV VQQPVSKSNE SEKIWHYKDP SGKVQGPFSM  780
AQLRKWNNTG YFPAKLEIWK AKESPLDSIL LTDALAGLFQ KQAQAVNNSY TKTQVAAYSG  840
QSSQSDSNLG STARTAPTIE IPSNSQDTWS QGGSLPSPTP NQITTPTAKR RNFESRWSPT  900
KHSPQSPNQL MNYAVAQSGQ SQASRIDIPV VVNSAGALQP QTYPIPASDS INASVIRPAA  960
LPSPTPGGGK QSWGSMQTDH RGSDALSSQN SSTSYGTTIP SVLPSQSQPG FPPSDSWKVA  1020
APSQPNPQXR DPISPRKGGF SSNESWTGTT PSQPNPQAQT HWGMNMVNNQ NSGQHQAPAN  1080
QNSSWGQGTV NPNMGWVGPA QAGVNVNWAG SSVPSTGQGI PNSGWGGPVQ GQPQAYPNPG  1140
WGVTAVPQAQ AQSQAQVQAP VSTTGAGWIQ PGQGMQSGNN NQNWGTQHQM AIPSGGSGGN  1200
QAGYWGNQQN QNGDSGYGWN RQSSGSGGQN NNFKGQRVCK FFRENGHCRK GASCNYLHN*
Functional Description ? help Back to Top
Source Description
UniProtPlays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA-dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforce low levels of H3K4 methylation and gene silencing at a subset of genomic loci. {ECO:0000269|PubMed:22940247}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g072290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070470.0AC007047.7 Arabidopsis thaliana chromosome 2 clone F16F14 map mi398, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092708.10.0PREDICTED: zinc finger CCCH domain-containing protein 19-like
SwissprotQ9SIV50.0C3H19_ARATH; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A1P8B1D00.0A0A1P8B1D0_ARATH; GW repeat-and PHD finger-containing protein NERD
STRINGXP_010516649.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54221620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding