PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g071570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 686aa    MW: 78958.3 Da    PI: 9.5629
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g071570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.3e-11411013699
                     EEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  36 ltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     l +   +g   +v +  +k+++  ++ ++GW++Fvk+n L   +f++F+++g+++f  +v++f++
  Csa15g071570.1  41 LLVLCNNGSCLKVAI--SKNPRFyFMEKSGWEKFVKDNALGHSEFLTFTHKGNMSF--TVSIFKQ 101
                     444445667777788..999999555569***********************9***..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1115102IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-819100No hitNo description
SMARTSM010194.9E-819102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-1234103IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-940101IPR003340B3 DNA binding domain
PROSITE profilePS508639.03767102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-6195265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-9196268IPR015300DNA-binding pseudobarrel domain
CDDcd100177.14E-6201274No hitNo description
SMARTSM010191.3E-4203296IPR003340B3 DNA binding domain
TIGRFAMsTIGR016402.0E-36344558IPR017451F-box associated interaction domain
PfamPF082682.1E-22438576IPR013187F-box associated domain, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MARNADYLRC LQERKNEGFF KAVRSIDVAS ENMLSLERLK LLVLCNNGSC LKVAISKNPR  60
FYFMEKSGWE KFVKDNALGH SEFLTFTHKG NMSFTVSIFK QNGKEMLQPS QSRASLASSS  120
RIKTEQRRGS VYNDVKKDKV VSPELSNRGA TREAESNGGE KYKRKLSFRK KKPEETQNSK  180
RSEKVVRARR DSAASSSSSV PEFTILFKKA YLIFLRIPVS FAKDHMSEEK TMFKIHHPDG  240
KKSWNVVYLV RFRAFSGGWR SLVKELVLQP IIKFSISAPP AIVENGNENA KACGVWSFFS  300
SPQLENPYEK SSSTALVAAA ELHVRFSPDS LLINHDYDLR YCSCGYVSGL FYIYGNRYQA  360
RPLICNPVTG RYVILPDRYT YRKAYSFFGF DPIEKQYKAL SMAYYCAPGR NKILTLEDGD  420
LTWRRIKCPI RHDIKSDGVC INGVLYYLGD TSDCYNDAHV VTSDYIIVCF DVRSEKFFFI  480
DVERFCRLIN YKGKLAVIYW EDDEDIYKKC YFGKDLDEYL EENLEADATN ELHVWVLEDV  540
EKQEWSKYEY TWTDDRFFRR QVSIAGATAI ARFHCVSKLW ASMLASSYFK ELFRTKSLAK  600
PRLLFAIVKK DKWRFFSLPQ LHNPYEKSSS TLVAAAEFHV KFPRKILHNS NRLYFAHGYA  660
SGLIYFKGAS ADDRLVICNP NTGGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g071570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444278.10.0PREDICTED: F-box protein At2g15640-like
SwissprotQ9ZQF01e-144FB104_ARATH; F-box protein At2g15640
TrEMBLR0HSH11e-157R0HSH1_9BRAS; Uncharacterized protein
STRINGXP_010444278.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.13e-82B3 family protein