PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g071550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 372aa    MW: 42994.8 Da    PI: 6.1038
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g071550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.61e-1022481743
                    HHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF 17 rngilKKAeELSvLCdaevaviifsst 43
                    r g+lKK +EL +LCd+ v++i+fs++
  Csa15g071550.1 22 RVGLLKKVKELTILCDVMVCIIMFSPK 48
                    88***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-4657IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-131990IPR002100Transcription factor, MADS-box
PfamPF003198.8E-101948IPR002100Transcription factor, MADS-box
CDDcd002663.04E-161982No hitNo description
PROSITE profilePS5006610.6242048IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVCIIMFSPK EVEENNYVKK IRVGLLKKVK ELTILCDVMV CIIMFSPKEV EPMVWPSVEK  60
ARGLLDDFFS LPEIEKKKKE MNLESYLKEK KEKVHEQFLK SNKKHMGYVI DQLMVQLHRG  120
RRIDDLDLSE IFALISFSRD NIIRRRKESK FVQYSPLRDP PILPFEAQFE ELRNTRNDER  180
SWKTDEETKR ISIGNALREN QSHYLIDKWF FPSPLTPKQG NDQDIKMGMI SHNKNHDHAL  240
YQGNNSNENP NLDIAPVGAP MSTFHGFAGP ISQQLQDHVM FDNPTVSMRQ PRQHLFDFLS  300
PEFGVNGGST VSIDDSQFLE RSNIVSINND THQEPPLNGT TFGECNDEED IADVRSSDIN  360
KVWPSVNNQH F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g071550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087925.11e-172PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLV4NQI01e-123V4NQI0_EUTSA; Uncharacterized protein
STRINGBostr.18351s0040.1.p1e-177(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-106AGAMOUS-like 48