PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g059710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 289aa    MW: 33407.6 Da    PI: 8.4769
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g059710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.23.5e-24123167145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     daepgrCrRtDGKkWRCs+++++++k+CErH+hrg++rs+++k +
  Csa15g059710.1 123 DAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKPP 167
                     79**************************************99875 PP

2QLQ59.59.4e-214176237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT +Q+++L++Q+l++KyLaan+PvPp+Ll+ i++
  Csa15g059710.1 41 PFTESQWEELENQALVFKYLAANVPVPPHLLFLIKR 76
                    8******************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-144076IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.494176IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.4E-154174IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.005123167IPR014977WRC domain
PfamPF088793.0E-19124165IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKRNNKQEED MKHRDSADCS FFFFFFFFFI SLSLFMATRI PFTESQWEEL ENQALVFKYL  60
AANVPVPPHL LFLIKRPFLF SSSSSSSSSS SPSSPSPSSF FSPTLSPHFG WNVYEMGMGR  120
KIDAEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGKNR SSSRKPPPPQ FTPNLFLESS  180
LSSSRVSRRR RSGYMDDFFS IEPSGSIKSC SGLAMEDDEG SCREKQPDRH CFILGTDLGT  240
RERPLMLDEE KLKQRDDEDE EEQRSKRLYR FLDEWPSSKS SVSTSLFI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g059710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605860.0AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.
GenBankAY1255720.0AY125572.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467119.10.0PREDICTED: growth-regulating factor 6
SwissprotQ9ZQ121e-132GRF6_ARATH; Growth-regulating factor 6
TrEMBLA0A1P8B2591e-135A0A1P8B259_ARATH; Growth-regulating factor 6
STRINGXP_010467119.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.11e-109growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]