PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g059710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRF | ||||||||
Protein Properties | Length: 289aa MW: 33407.6 Da PI: 8.4769 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.2 | 3.5e-24 | 123 | 167 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCs+++++++k+CErH+hrg++rs+++k + Csa15g059710.1 123 DAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKPP 167 79**************************************99875 PP | |||||||
2 | QLQ | 59.5 | 9.4e-21 | 41 | 76 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l++KyLaan+PvPp+Ll+ i++ Csa15g059710.1 41 PFTESQWEELENQALVFKYLAANVPVPPHLLFLIKR 76 8******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.7E-14 | 40 | 76 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.49 | 41 | 76 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.4E-15 | 41 | 74 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.005 | 123 | 167 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-19 | 124 | 165 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MKRNNKQEED MKHRDSADCS FFFFFFFFFI SLSLFMATRI PFTESQWEEL ENQALVFKYL 60 AANVPVPPHL LFLIKRPFLF SSSSSSSSSS SPSSPSPSSF FSPTLSPHFG WNVYEMGMGR 120 KIDAEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGKNR SSSRKPPPPQ FTPNLFLESS 180 LSSSRVSRRR RSGYMDDFFS IEPSGSIKSC SGLAMEDDEG SCREKQPDRH CFILGTDLGT 240 RERPLMLDEE KLKQRDDEDE EEQRSKRLYR FLDEWPSSKS SVSTSLFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00263 | DAP | Transfer from AT2G06200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g059710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060586 | 0.0 | AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds. | |||
GenBank | AY125572 | 0.0 | AY125572.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010467119.1 | 0.0 | PREDICTED: growth-regulating factor 6 | ||||
Swissprot | Q9ZQ12 | 1e-132 | GRF6_ARATH; Growth-regulating factor 6 | ||||
TrEMBL | A0A1P8B259 | 1e-135 | A0A1P8B259_ARATH; Growth-regulating factor 6 | ||||
STRING | XP_010467119.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14101 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06200.1 | 1e-109 | growth-regulating factor 6 |
Publications ? help Back to Top | |||
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