PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g050010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 337aa MW: 39039.4 Da PI: 6.7981 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.5 | 4e-14 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ien+ r + kRr+g+lKK +E+ +LCd+++++i+fs++ Csa15g050010.1 11 IENDNSRVIRSKKRREGLLKKIHEVTILCDVKACIIMFSPE 51 99999999999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.871 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.96E-25 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.14E-19 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-13 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MARKKIKLAW IENDNSRVIR SKKRREGLLK KIHEVTILCD VKACIIMFSP EEDYPMVWPS 60 LKQARDLLDD FFALPEIEKK RKETSLESYL KEKTKKVQEQ LMKTHKKNQN YAIDQMMLQL 120 HRGRSIADLD LNEIYALISF SKDKVILHRK RLHFVQHSPL RDPPVPLFER KFEEFETTTN 180 DVFARGRQED ERAWYTNEAR KEININDAIS GNQSCYLIDQ WFPFQGNDIN GLEMEPIGAP 240 VISFHGLVGS VSQPLQHHNT NNNPTMAMSQ PNQCPFDFMN PEFGVKEKGS MVNNGDSQFQ 300 RRSNTIEISN GIRRESPPKE ATDGEDNDDV MPIDMN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKIKLAWIENDNSRVIRSKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g050010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019096769.1 | 0.0 | PREDICTED: floral homeotic protein PMADS 1-like | ||||
TrEMBL | V4NQI0 | 1e-134 | V4NQI0_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.19424s0082.1.p | 1e-157 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 1e-103 | AGAMOUS-like 48 |