PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa15g048570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 262aa MW: 29030.7 Da PI: 8.2939 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.2 | 1.3e-19 | 184 | 218 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l Csa15g048570.1 184 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 218 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-15 | 178 | 228 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.873 | 181 | 214 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-15 | 181 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.3E-15 | 182 | 216 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.02E-14 | 183 | 230 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 184 | 209 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.7E-17 | 184 | 218 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MEMESFMDDL LNFTVPEEDD EEETQQPRNI TRRKTGIRQT DSLGLLNHGD HGVVEEEDLE 60 WISNKDAFPV IETFVGMLPP EHFRVTSPER EAIEGKQLSP VSVLETSSNS STTTTTSNSS 120 GGSTALATTT SMLMSCCVSF KAPAKARSKR RRTGRRDLRV LWTGNEIQKK KTMSAAAVII 180 GRKCQHCGAE KTPQWRAGPL GPKTLCNACG VRYKSGRLVP EYRPANSPTF TAELHSNSHR 240 KIVEMRKQYQ SGDGDHRKDC G* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa15g048570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT024497 | 0.0 | BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds. | |||
GenBank | Y13648 | 0.0 | Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466791.1 | 0.0 | PREDICTED: GATA transcription factor 1-like isoform X1 | ||||
Swissprot | Q8LAU9 | 1e-126 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | R0HN96 | 1e-127 | R0HN96_9BRAS; Uncharacterized protein | ||||
STRING | XP_010466791.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12987 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-117 | GATA transcription factor 1 |