PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g046880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 209aa    MW: 24049.5 Da    PI: 9.708
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g046880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.53.6e-231562249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + +n+sn qvtfskRr g++KKA+EL++LC++e+++i+fs++gk++ +
  Csa15g046880.1 15 KMKNESNLQVTFSKRRFGLFKKASELCTLCGVEILMIVFSPSGKVFSF 62
                    679******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-34665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.922666IPR002100Transcription factor, MADS-box
CDDcd002653.89E-32780No hitNo description
SuperFamilySSF554556.67E-25775IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-20828IPR002100Transcription factor, MADS-box
PfamPF003192.0E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-202843IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-204364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRSNKGRQK IEMKKMKNES NLQVTFSKRR FGLFKKASEL CTLCGVEILM IVFSPSGKVF  60
SFGHPGVLAR QEKTKHNRMT LTIVRQSREQ RGKSWYEKDV KELDLNETKH LICALQDVKK  120
TLVNEKSHYP QLNVSHQSYM GESSVFGGGR NVDVGGIYLF DQRVNTFSYN PVIDFPNQTP  180
LFGYDNDEVI VLVYNMNYMS SYNFNESY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-14763258MEF2 CHIMERA
6bz1_B9e-14763258MEF2 CHIMERA
6bz1_C9e-14763258MEF2 CHIMERA
6bz1_D9e-14763258MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g046880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615895e-56AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankAY0861785e-56AY086178.1 Arabidopsis thaliana clone 21999 mRNA, complete sequence.
GenBankAY1412345e-56AY141234.1 Arabidopsis thaliana MADS-box protein AGL40 mRNA, complete cds.
GenBankCP0026875e-56CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ4469025e-56DQ446902.1 Arabidopsis thaliana clone pENTR221-At4g36590 MADS-box protein (At4g36590) mRNA, complete cds.
GenBankDQ6532505e-56DQ653250.1 Arabidopsis thaliana clone 0000012838_0000009267 unknown mRNA.
GenBankZ997085e-56Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421657.11e-122PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_010421667.11e-122PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK26e-40AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLD7MBG39e-98D7MBG3_ARALL; Uncharacterized protein
STRINGXP_010421657.11e-121(Camelina sativa)
STRINGXP_010421667.11e-121(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-77M-type_MADS family protein
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]