PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g040580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 409aa MW: 47018.1 Da PI: 4.802 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 64 | 156 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ Csa15g040580.1 64 FLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKN 149 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ Csa15g040580.1 150 IRRRKTS 156 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.58E-36 | 59 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-60 | 60 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.4E-39 | 60 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.6E-31 | 64 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.6E-19 | 64 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.6E-19 | 102 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 103 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.6E-19 | 115 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MDPSFRFIKE EFPTGFSDSP SPPSSSSSSY LYSSSMAEAA LYDPTTLSYP QPIEGLHESG 60 PPPFLTKTYD LVEDSRTNHV VSWSKSNNSF IVWDPQAFSV TLLPRFFKHN NFSSFVRQLN 120 TYGFRKVNPD RWEFANEGFL RGQKHLLKNI RRRKTSNNSN QLQQPQGSEQ QSLDNCCIEV 180 GRYGLDGEMD SLKRDKQVLM MELVRLRQQQ QSTKMYLTTI EEKLKKTESK QQQMMSFLAR 240 AMKNPDFIQQ LMEQKEKRKE IEEAISKKRQ RPIDQGKRNV VNVGDYDDES GYGNNAAAST 300 SAFVDMNQET YGNTSQYEMS ELDRLAMHIQ GLGDHSTREE FMNVGKGNED EEEDQQRGCQ 360 KEKMEIYGEG FWEDLLNEGQ NFDFEGDQEN VDVLIEQLGY LGSNSHIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-25 | 59 | 156 | 12 | 123 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g040580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045974 | 0.0 | AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds. | |||
GenBank | AY079374 | 0.0 | AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466576.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 0.0 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | R0G5K1 | 0.0 | R0G5K1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010466576.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 0.0 | heat shock transcription factor A6B |