PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g031750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 378aa MW: 42062.1 Da PI: 6.5111 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.7e-08 | 286 | 326 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L Csa15g031750.1 286 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 326 69******************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.123 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-13 | 282 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-10 | 283 | 331 | No hit | No description |
SMART | SM00353 | 5.9E-13 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-12 | 285 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-6 | 286 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MCSAVITTRI VFDLMEGLES VYAQAMYGMT RDSKIMDHHH QGSDLIWGGN ELMMARELCS 60 SSSSFHHHHQ LINPNLSSCY MSDLGVIGEI QQQQEHVGNR ASSIDPSSLD CLLSATSNSN 120 NTSTEDDEGI SVLFSDSQTL WSFGGVSSAE SENREITPET TTTTTMVKPK SLKRNRGGDE 180 KETHFRLVRP QDDSEKGGFK LIYDEDQSKS KKPRTEKERG GSSNISFQHS TCVSDNTEPD 240 AEAIAQMKEM IYRAAAFRPV NFGLEVVEKP KRKNVKISTD PQTVAARQRR ERISEKIRVL 300 QTLVPGGTKM DTASMLDEAA NYLKFLRAQV KALENLRPKL DPTNLSFSSA PSPSFPLFHP 360 SFLPLQNPNQ IHHHPEC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 291 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g031750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488617 | 0.0 | AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AP001305 | 0.0 | AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9. | |||
GenBank | BT020364 | 0.0 | BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466371.1 | 0.0 | PREDICTED: transcription factor bHLH87-like | ||||
Swissprot | Q8S3D2 | 0.0 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | R0G609 | 0.0 | R0G609_9BRAS; Uncharacterized protein | ||||
STRING | XP_010466371.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7960 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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