PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g031650.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 200aa MW: 22080.7 Da PI: 9.4137

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g031650.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.9	6e-40	22	81	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn ++ Csa15g031650.1 22 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNVPVGGGSRKNATK 81 5789****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.3E-33	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.311	26	80	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-24	26	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MQDPAAYYQT MMAKQQQPQF AEQEQLKCPR CDSPNTKFCY YNNYNLSQPR HFCKNCRRYW 60 TKGGALRNVP VGGGSRKNAT KRSTTSSSSS PPSSNTNKKT KTPDPDLEPR NQQNPELDPT 120 RMLYGFPIGD QDVKGMEIGG SFSSLLASNM QFGLGGGIML DGSGWDHPGM GMGLGLRRSE 180 PGSNNNPWTD LAMNRVEKN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g031650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017565	1e-166	AB017565.1 Arabidopsis thaliana adof2 mRNA for Dof zinc finger protein, complete cds.
GenBank	AB023045	1e-166	AB023045.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXL8.
GenBank	AY150391	1e-166	AY150391.1 Arabidopsis thaliana Dof zinc finger protein (At3g21270) mRNA, complete cds.
GenBank	CP002686	1e-166	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010466363.1	1e-148	PREDICTED: dof zinc finger protein DOF3.1-like isoform X1
Refseq	XP_019092404.1	1e-148	PREDICTED: dof zinc finger protein DOF3.1-like isoform X2
Refseq	XP_019092405.1	1e-148	PREDICTED: dof zinc finger protein DOF3.1-like isoform X3
Swissprot	Q94AR6	1e-102	DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBL	D7L0R0	1e-118	D7L0R0_ARALL; Uncharacterized protein
STRING	XP_010466363.1	1e-147	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	5e-84	DOF zinc finger protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]