PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g030970.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 461aa MW: 49952.2 Da PI: 6.7061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g030970.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.4e-06	351	389	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk L Csa15g030970.1 351 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 389 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.976	340	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0075	346	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.12E-6	350	394	No hit	No description
SuperFamily	SSF47459	3.53E-11	350	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-10	354	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MGDHHDFINS GSWWKVSSSS SPSSSSSMRA SSIESGGSAI FHDKLHHHHH HDHSLGTSDH 60 HLQMIGLGLS SQSPVDQWNQ SLLRGDSKAE TSFGVMLQEN LNLDAASNAN ANTTSSTSSY 120 QLQESDSSHH QALWRDPQND FKPQIMTNNN RGFFLDHQFS PHGSSSTDSS TVTCQGFSVD 180 NSSNNTLYAA AATTTPNSSS GMFHQHQTAG FGSSDQQPSR NHQQSSLGYS QYGSSTGNYD 240 QMASALPNST WFLRASPPKP HSPLRFSNNA TFWNPAATGN AGPPPSHDAS SNFFPALQPP 300 QIHAPSFDEQ PKNISEIRDS SNNEVKRGGG DQPAAKRAKS ETASPSPAFK VRKEKMGDRI 360 AALQQLVSPF GKTDAASVLS EAIEYIKFLH QQVSALSNPY MKSGASLQHQ QSDHPKELEV 420 SEEPDLRSRG LCLVPVSSTF PVTHDTTVDF WTPTFGGTFR *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MGDHHDFINS GSWWKVSSSS SPSSSSSMRA SSIESGGSAI FHDKLHHHHH HDHSLGTSDH  60
HLQMIGLGLS SQSPVDQWNQ SLLRGDSKAE TSFGVMLQEN LNLDAASNAN ANTTSSTSSY  120
QLQESDSSHH QALWRDPQND FKPQIMTNNN RGFFLDHQFS PHGSSSTDSS TVTCQGFSVD  180
NSSNNTLYAA AATTTPNSSS GMFHQHQTAG FGSSDQQPSR NHQQSSLGYS QYGSSTGNYD  240
QMASALPNST WFLRASPPKP HSPLRFSNNA TFWNPAATGN AGPPPSHDAS SNFFPALQPP  300
QIHAPSFDEQ PKNISEIRDS SNNEVKRGGG DQPAAKRAKS ETASPSPAFK VRKEKMGDRI  360
AALQQLVSPF GKTDAASVLS EAIEYIKFLH QQVSALSNPY MKSGASLQHQ QSDHPKELEV  420
SEEPDLRSRG LCLVPVSSTF PVTHDTTVDF WTPTFGGTFR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g030970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118054	0.0	AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBank	BT008580	0.0	BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010466266.1	0.0	PREDICTED: transcription factor bHLH123
Swissprot	Q8GXT3	0.0	BH123_ARATH; Transcription factor bHLH123
TrEMBL	R0HLE7	0.0	R0HLE7_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010466266.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]