PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g030510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27718.9 Da PI: 9.2836 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 23 | 73 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + + r++lg+f++aeeAa+a++aa+++l+g Csa15g030510.1 23 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDAAARNLRG 73 68********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-14 | 23 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.13E-19 | 23 | 83 | No hit | No description |
SMART | SM00380 | 7.9E-39 | 24 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 24 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.039 | 24 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 24 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-11 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MRKGRGSSVV GPALLPVGSV KEPRYRGVRK RPWGRFAAEI RDPLKKSRVW LGTFDSAEEA 60 ARAYDAAARN LRGPKAKTNF PIDCSPSSPL QPINYHHQNQ NQNRNQNLCS AAAAAANQNQ 120 IDPFMDHRLY GGGNFQDQQQ QQQMISRPAS SSMSSTVKSC SGPRPMAEAA ASSSVAKPLH 180 AIKKRYPRTP PVAPEDCHSD CDSSSSVIDD GDDIASSSSR RKPPFQFDLN FPPLDGVDLF 240 AGATDDLHCT DLRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-21 | 24 | 90 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g030510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024036 | 1e-157 | AB024036.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC12. | |||
GenBank | AB032201 | 1e-157 | AB032201.1 Arabidopsis thaliana mRNA for ERF transcription factor 7, complete cds. | |||
GenBank | AK228460 | 1e-157 | AK228460.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding factor, complete cds, clone: RAFL15-05-J12. | |||
GenBank | AY037254 | 1e-157 | AY037254.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds. | |||
GenBank | AY085023 | 1e-157 | AY085023.1 Arabidopsis thaliana clone 124720 mRNA, complete sequence. | |||
GenBank | AY094001 | 1e-157 | AY094001.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds. | |||
GenBank | CP002686 | 1e-157 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466214.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 7-like isoform X2 | ||||
Swissprot | Q9LDE4 | 1e-121 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | D7LAY3 | 1e-120 | D7LAY3_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010466214.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-96 | ethylene response factor 7 |
Publications ? help Back to Top | |||
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